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June 30, 2007

Evolution for a Few or Evolution for Everyone? A Survey of Hypotheses about the Evolutionary Origin of Religion

religiontop-rd.jpgWhy did religion arise in the human species? Stanley Fish has a blog post at the New York Times observing that Richard Dawkins, "finds that the manufacturing and growth of religion is best described in evolutionary terms: '[R]eligions, like languages, evolve with sufficient randomness, from beginnings that are sufficiently arbitrary, to generate the bewildering – and sometimes dangerous – richness of diversity.'” Dawkins isn't the only scientist who takes this kind of approach. David Sloan Wilson is getting a lot of attention these days regarding his views on the evolutionary origin of religion. Wilson is much more serious in his approach than Dawkins, but Wilson has been frank regarding how many academics view religion through an evolutionary perspective. In his Darwin’s Cathedral: Evolution, Religion, and the Nature of Society (University of Chicago Press, 2002), he observes that “inside and outside the ivory tower, religion is often portrayed as costly for the believer, delivering at best only vague psychic benefits in return.” (pg. 86) He declares his aim “to study religious groups the way I and other evolutionary biologists routinely study trees, bacteria, and the rest of life on earth.” (pg. 87) Wilson also exposes the mindset among some academics that “[r]eligious folk should abandon their beliefs in the face of superior knowledge and if they don’t they are being irrational.” (pg. 41) While Wilson urges his readers to resist the temptation to ridicule religion as irrational, he himself nonetheless contends that “many religious beliefs are false as literal descriptions of the real world” and specifically takes aim at Christianity, writing that an atheist historian would be “factually attached to … reality” while the Gospels of the New Testament provide may good wisdom but ultimately “distort the facts of the real world.” (pg. 228)

Is "Evolution for Everyone"?
To his credit, Wilson is very open about his own religious background: In his more recent book Evolution for Everyone: How Darwin’s Theory Can Change the Way We Think About Our Lives (Delacorte Press, 2007), he acknowledges that “[m]y own background is not at all religious” and describes his father as highly “scornful of religion.” (pg. 236) Wilson recounts his “father’s gleeful expression” after telling a story about a preacher that boasted about the wealth in a church congregation, “as if the hypocrisy of all religion had been revealed.” (pg. 236) Nonetheless, Wilson is steadfast in stating that we should not view religion as a bad thing and praises John Marks Templeton for supporting research that seeks harmony between science and religion, and for being willing to fund “a proposal on religion from an evolutionary perspective.” (pg. 236)

This is most interesting: Wilson titles his book “Evolution for Everyone,” but how would “everyone” feel about the leading evolutionary hypotheses he describes that are put forward to explain an evolutionary origin of religion? According to Wilson, religious persons can select from any one of five evolutionary hypotheses to explain why their religion, and religion in general, exists:

  • Religious “groups are a product of cultural group selection and are indeed like bodies and beehives.” (pg. 237)
  • Religion is “exposed as a scam operation, with the leaders fleecing rather than leading their flocks.” (pg. 238)
  • Religion is “like disease epidemics that leave everyone worse off than before, leaders and followers alike.” (pg. 238)
  • Religion is “like obesity, something that we do because we can’t help it, even though it is no longer good for us.” (pg. 238)
  • Religion is “like mad monkeys and a dog’s curly tail, which have no function and persist only by virtue of a connection to something else that does.” (pg. 238)

    So if evolution is truly “for everyone,” then religious persons can apparently choose to view their religion as one of the following: a “scam operation,” a “disease epidemic,” useless “obesity,” a “mad monkey” with “no function,” —or they can view religion like “bodies and beehives.”

    Obviously the final option would likely be the least offensive to religious persons, and indeed it coheres with the description of that some religions give about themselves (for example, Christianity sometimes compares the Christian church to a body with many parts that contribute to benefit the whole). The "beehive" analogy is the explanation preferred by Wilson, although of course Wilson views “bodies and beehives” as undesigned objects that arose via unguided evolutionary processes.

    Would most religions see themselves as the result of an undesigned and unguided process, or would they see themselves as somehow directly inspired by the divine? If Wilson is right that evolution is “for everyone,” then I suppose religious persons who accept Neo-Darwinism can take their pick:

    How To Explain Religion Under an Evolutionary Paradigm--Theistic Evolutionists, You Can Take Your Pick:
    religion.jpg

  • June 29, 2007

    Sean Carroll Fails to Scale The Edge of Evolution (Part III): Is Carroll Scared of Approaching the Edge of Evolution?

    [Editor's Note: This is Part 3 of a 4-part response. The full response can be read here.]

    edgeofev.jpgIn Part I of this series, I discussed how Sean Carroll's review of Michael Behe's new book, The Edge of Evolution: The Search for the Limits of Darwinism, misrepresents and oversimplifies Behe's arguments. In Part II, I discussed the fact that one of Carroll's citations actually confirms Behe's argument that there is an edge to evolution, and that evolution tends to not proceed forward when additional mutations decrease functionality. In this installment, I will discuss how many of Carroll's cited papers report types of evolution that Behe readily concedes can occur, and are unimpressive examples within the "edge" of evolution.

    It's Easier to Tear Down Walls than to Build Them
    To demonstrate the power of evolution, Carroll cites the evolution of toxins. But Behe provides a ready discussion regarding the evolvability of destructive proteins because they entail merely evolving the ability to break things in the cell—a relatively simple task:

    Foreign proteins injected into a cell by an invading virus or bacterium make up a different category. The foreign proteins of pathogens almost always are intended to cripple a cell in any way possible. Since there are so many ways to break a machine than to improve it, this is the kind of task at which Darwinism excels. Like throwing a wad of chewing gum into a finely tuned machine, it’s relatively easy to clog a system—much easier than making the system in the first place. Destructive protein binding is much easier to achieve by chance.

    (Michael J. Behe, The Edge of Evolution: The Search for the Limits of Darwinism, pg. 149 (Free Press, 2007).)

    It seems like Behe has a ready rejoinder to Carroll’s mention of the evolution of toxins.

    Carroll’s Sickening Citations
    In another incredibly misplaced example, Carroll cites the evolution of malarial resistance to drugs as a rebuttal to Behe. Yet Behe spends multiple chapters discussing the evolution of resistance to malaria and how it generally entails unimpressive genetic changes that, in actually, demonstrate that there is a limit to evolutionary change

    Finally, as I discussed in part II, Carroll also cites antibiotic resistance by referencing a paper that agrees with Behe's finding that there is an edge to the creative power of Darwinian evolution. In fact, Behe finds that bacterial mechanisms of antibiotic resistance present a challenge to natural selection that pales in comparison to the challenge posed by true complexity of the cell:

    Where is it reasonable to draw the edge of evolution? ... One the one side ... several mutations can sequentially add to each other to improve an organism's chance of survival. An example is the breaking of the regulatory controls of fetal hemoglobin to help alleviate sickle cell disease. ... On the other side are the examples of what random mutation and natural selection clearly cannot do. ... The structural elegance of systems such as the cilium, the functional sophistication of the pathways that construct them, and then the total lack of serious Darwinian explanations all point insistently to the same conclusion: They are far past the edge of evolution. Such coherent, complex, cellular systems did not arise by random mutation and natural selection, any more than the Hoover Dam was built by the random accumulation of twigs, leaves, and mud.

    (Michael Behe, The Edge of Evolution: The Search for the Limits of Darwinism, pg. 111-112, (Free Press, 2007).)

    Carroll simply isn't engaging Behe's arguments. He cites papers that discuss the evolution of biological functions that Behe already acknowledges are within the "edge" of what Darwinian evolution can produce. As discussed in the next post, Carroll’s only attempts to approach Behe’s edge of evolution fall far short.

    Baron Münchhausen and the Self-Creating Universe

    Poor Baron Münchhausen, drowning in a swamp without hope of rescue, had no choice but to lift himself from the predicament by a concentrated pulling on his own hair. The prolific theoretical physicist Paul Davies has recently attempted a similar solution in respect of cosmological fine-tuning, but alas, mostly to depilatory effect. It’s a safe bet that the emperor has no hair!

    In an op-ed published in The Guardian on Tuesday, Paul Davies eschewed both intelligent design and the meta-laws of the multiverse as explanations of the exquisite fine-tuning of the physical laws and constants of our universe, claiming that both are explanatorily vacuous (see here). We can in good conscience proclaim him half right in this judgment, which places him well ahead of a good many cosmologists. But then what solution does he suggest?

    …I propose instead that the laws are more like computer soft-ware: programs being run on the great cosmic computer. They emerge with the universe at the big bang and are inherent in it, not stamped on it from without like a maker’s mark…. Seth Lloyd, an engineer at MIT, has calculated how many bits of information the universe has processed since the big bang. The answer is one followed by 122 zeros. Crucially, however, the limit was smaller in the past because the universe was younger. Just after the big bang, when the basic properties of the universe were being forged, its information capacity was so restricted that the consequences would have been profound.

    Here’s why. If a law is a truly exact mathematical relationship, it requires infinite information to specify it. In my opinion, however, no law can apply to a level of precision finer than all the information in the universe can express. Infinitely precise laws are an extreme idealisation with no shred of real world justification. In the first split second of cosmic existence, the laws therefore must have been seriously fuzzy. Then, as the information content of the universe climbed, the laws focused and homed in on the life-encouraging form we observe today. But the flaws in the laws left enough wiggle room for the universe to engineer its own bio-friendliness… the laws explain the universe even as the universe explains the laws. If there is an ultimate meaning to existence, as I believe is the case, the answer is to be found within nature, not beyond it. The universe might indeed be a fix, but if so, it has fixed itself.


    One is inclined to remark that the initial cosmic laws are not the only thing that is seriously fuzzy: whence the great cosmic computer and its incipient software, ever so flexible? Its origin begs explanation and bespeaks intelligence. Whence the homing signal providing teleological focus to life-encouraging laws and constants? The universe “engineers its own biofriendliness”? So the universe itself has a pre-specified goal that it engineers and hence exhibits one of the key features of intelligence? To escape a transcendent intelligence, it appears that Davies has personified the universe and attributed intelligent agency to matter, energy and space-time. This would conventionally be regarded as a form of pantheism/nature mysticism rather than a scientific conjecture, and it is afflicted with the pantheistic malaise: it leaves the whole apotheosized universe hanging in mid-air, so to speak.

    Let me explain. In virtue of animating nature by attributing intrinsic intelligence, purpose and meaning to it, Davies has declared himself in possession of resources adequate to the task of fine-tuning the laws and constants of the universe and generating the information requisite to life’s origin and development. However, he has no explanation for the intelligence and purpose he postulates to be incipient in primal matter, energy and spacetime, nor has he offered an account of its essential character – and the question of universal origins is still untouched. That the universe did not always exist is certain, even when multiverse scenarios are considered, since the mechanism of “eternal inflation” postulated to give rise to the multiverse is not eternal into the past (Borde, Guth & Vilenkin: arXiv:gr-qc/0110012 v2 14 Jan 2003).

    But is Davies still entitled to a tu quoque with respect to ID? He seems to think so. He opines that “[d]umping the problem in the lap of a pre-existing designer is no explanation at all, as it merely begs the question of who designed the designer.” Let’s handle this matter expeditiously. First, design inferences are epistemically warranted when specified information of a certain complexity (high improbability) is observed, quite independent of whether we have an explanation for the intelligence behind the design. Here’s a particularly telling example: Roger Penrose has calculated that the entropy of the big bang itself, in order to give rise to the life-permitting universe we observe, must be fine-tuned to one part in e10exp(123)≈1010exp(123). Such complex specified conditions do not arise by chance, even in a string-theoretic multiverse with 10500 different configurations of laws and constants, so an intelligent cause may be inferred. What is more, since it is the big bang itself that is fine-tuned to this degree, the intelligence that explains it as an effect must be logically prior to it and independent of it – in short, an immaterial intelligence that transcends matter, energy and space-time. So much, then, for a personified universe engineering its own bio-friendliness: the universe is not a free lunch and the intelligence of which it gives evidence is not incipient within it.

    Second, we must confront the implicit suggestion that articulating intelligent design as an explanation constitutes an appeal to ignorance. It does not. Science seeks to understand the past on the basis of presently operative causes sufficient to the explanation of what is observed. There is only one presently active cause known to be sufficient to the task of producing complex specified information: intelligence. When intelligence is put forward as the proper explanation of the extreme precision of life-friendly cosmological fine-tuning, we are therefore offering an explanation on the basis of what we know. It is an appeal to knowledge, not to ignorance.

    Finally, there is the perennial taunt “So who designed the designer?” This is a philosophical and theological question, not a scientific one, so it does not constitute a scientific objection to intelligent design. Even so, the astute philosopher or theologian will recognize that the objection rests on a category mistake. Only contingent beings require an explanation for their existence, necessary beings do not. The question is, of course, whether there are any necessary beings other than inert abstract objects like mathematical entities. If we avail ourselves of the apparatus of possible world semantics, as philosophers are wont to do, a brief argument to the affirmative can be offered: the necessary existence of a transcendent personal being of consummate greatness (God) is possibly exemplified, i.e., the concept is logically coherent and therefore exemplified in some possible world. But a being that exists necessarily must exist in every possible world, and since the actual world is a fortiori possible, we may conclude, without qualification, that God exists. Where all of this leads, of course, is to the realization that the universe is indeed a fix, and that God did indeed fix it – it did not “fix itself.”

    June 28, 2007

    Sean Carroll Fails to Scale The Edge of Evolution (Part II): Carroll's Citations Actually Confirm Michael Behe's Arguments

    [Editor's Note: This is Part 2 of a 4-part response. The full response can be read here.]

    edgeofev.jpgIn my previous post, I explained how Sean Carroll's review of Michael Behe's book The Edge of Evolution badly misrepresented Behe's arguments. Behe has responded to many of Carroll's arguments here, but unfortunately for Carroll, it gets much worse. One paper Carroll cites in an attempt to refute Behe actually explicitly confirms Behe’s position that there are limits to the creative power of Darwinian processes. Carroll argues that Behe claims that "multiple-amino acid replacements therefore can't happen." In contrast to Carroll's misrepresentation, Behe's actual position contends evolution can proceed forward where there is a stepwise advantage gained with each mutation, but Behe also contends that evolution gets stuck when intermediate states becomes harmful or do not increase fitness: "If two mutations have to occur before there is a net beneficial effect--if an intermediate state is harmful, or less fit than the starting state--then there is already a big evolutionary problem." (Behe, The Edge of Evolution, pg. 106) Carroll cites examples of "cumulative selection changing multiple sites in evolving proteins," but one of Carroll's examples confirms Behe’s actual position.

    One of the papers cited by Carroll demonstrates that 5 amino acid sites can change during the evolution of bacterial resistance to the antibiotic drug penicillin. Yet this paper actually confirms Behe’s view, as it reports that 102 of the 120 possible mutational combinations don't occur naturally for precisely the reason Behe says they won’t work: they don’t give stepwise mutational advantages. Consider how similar this finding is to Behe's argument above:

    However, we demonstrate that 102 trajectories are inaccessible to Darwinian selection and that many of the remaining trajectories have negligible probabilities of realization, because four of these five mutations fail to increase drug resistance in some combinations.

    (Daniel M. Weinreich, Nigel F. Delaney, Mark A. DePristo, Daniel L. Hartl, "Darwinian Evolution Can Follow Only Very Few Mutational Paths to Fitter Proteins," Science, Vol. 312:111-114 (April 7, 2006), emphasis added.)

    In other words, the evolution stopped when the evolutionary pathway encountered a point where any further mutations cause bacterial resistance to the anti-biotic drug to drop, or did not increase it. This implies that when random mutation and natural selection is asked to either do a random walk or traverse a drop in fitness, it gets stuck. Carroll's example of bacteria evolving resistance does not address Behe's arguments. In fact, it confirms precisely why Behe argues there is an edge to evolution.

    June 27, 2007

    Behe Talks Back: Taking on Critics of The Edge of Evolution

    The first major reviews of Michael Behe’s The Edge of Evolution are now up in magazines like Science, The New Republic, and The Globe and Mail. As Bruce Chapman noted here, certain Darwinists appear to be mounting a campaign to try to discredit Behe's argument — without, of course, ever directly addressing it.

    While the Darwinists unfairly malign Edge, Dr. Behe has now responded to their criticisms over at his Amazon blog, a dynamic new forum where authors are able to reach their readers directly. Want to know what Behe has to say about Jerry Coyne, Michael Ruse, and Sean Carroll? Sure you do. Go check it out. You'll get a healthy dose of clear thinking and good humor from the venerable doctor himself.

    Darwin, Conservatives, and the State of Debate

    Tom Bethell of The American Spectator was present at the recent debate on Darwin and conservatism held at AEI. I am delighted that he was there or we would not have his droll, apt description of the event in the July-August number of the Spectator.

    We are watching the Darwinists launch bold and deceitful attacks on all critics of their man’s theory. And they go farther—as witness Cornelia Dean, queen of The New York Times Science Page, in her assault Tuesday on the Catholic Church and the Christian effort to reserve the soul, at least, as something more than material expression.

    In this environment, why is John Derbyshire National Review’s “designated point man” against intelligent design (as Bethell reports Derbyshire announced himself at AEI)? Who “designated” him? Why are conservatives still silent, with few exceptions, as the far left and the Darwinists personally berate scholars like astronomer Guillermo Gonzalez—just denied tenure at Iowa State (Iowa State!) because off-campus he is a proponent of intelligent design in the cosmos—and Michael Behe—whose hard logic and solid evidence in his new book, The Edge of Evolution, Darwinists believe can be answered best by personal abuse?

    I know they can get away with it in the mainstream media, but why are conservatives so supine in the face of this kind of assault? Even old fashioned liberals, if there are any, should be appalled by the attempted opinion suppression practiced now on the Darwinist Left.

    Fair, old fashioned debates like the one at AEI are prized by us as intellectual combat. We like them because they are relatively civilized and witnesses can weigh the arguments for themselves, without filters. We also like them because we think we win them. Say this for Arnhart (who, by the way, always conducts himself as a gentleman) and even Derbyshire: they aren’t afraid to appear against Discovery spokesmen. That is in contrast to the smear artists of the Darwinist Left.

    June 26, 2007

    It’s Not Easy Being a Materialist

    SDSC_1.jpg

    P.Z. Myers and I have been discussing this question for a while: is the brain sufficient for the mind? It’s clearly necessary for the mind, in everyday experience. Strokes and ethanol affect the brain and alter the mind. But necessity is not sufficiency. Is the brain alone — just matter — entirely sufficient for the mind? I think the mind needs an immaterial cause, like the soul. Myers doesn’t.

    How, from a scientific standpoint, could we resolve our disagreement? We would have to show, empirically, whether matter alone could, under the right circumstances, give rise to a mind. This is an experimental question, and it turns on the ability to create artificial intelligence (A.I.). If we could build machines that have first-person ontogeny, which is self-awareness, we could show conclusively that matter alone is sufficient to cause the mind. A conscious computer would have a mind that emerged from matter, and Myers would be vindicated. If we can’t create A.I., my viewpoint would seem more credible.

    How would we know that a computer had a conscious mind?

    Alan Turing, in 1950, suggested a test for consciousness in a machine. In the Turing test, an investigator would interact with a person and a machine, but would be blinded as to which was which. If the investigator couldn’t tell which one was the person, and which was the machine, it is reasonable to conclude that the machine had a mind like the person. It would be reasonable to conclude that the machine was conscious.

    Advocates of A.I. are passionate about their science. Transhumanist Ray Kurzweil is probably the most prominent proponent of the view that A.I. is possible, and even inevitable. He has written extensively on the scientific, philosophical, and cultural implications of A.I. His three most recent books are The Age of Spiritual Machines: When Computers Exceed Human Intelligence (1999), Fantastic Voyage: Live Long Enough to Live Forever (2004), The Singularity Is Near: When Humans Transcend Biology (2005). A.I. is, for many, a scientific eschatology.

    Yet things have not gone well for A.I. After a half-century of remarkable advances in computer technology, no computer has passed the Turing test. No computer has, by general consensus, a mind. Not even close.

    Many scientists and philosophers suggest that A.I. is not even theoretically possible. John Searle, a leading philosopher of the mind, has proposed a (now famous) thought experiment called The Chinese Room. Here’s my version:

    Imagine that P.Z. Myers went to China and got a job. His job is this: he sits in a room, and Chinese people pass questions, written on paper in Chinese, through a slot into the room. Myers, of course, doesn’t speak Chinese. Not a word. But he has a huge book, written entirely in Chinese, that contains every conceivable question, in Chinese, and a corresponding answer to each question, in Chinese. P.Z. just matches the characters in the submitted questions to the answers in the book, and passes the answers back through the slot.

    In a very real sense, Myers would be just like a computer. He’s the processor, the Chinese book is the program, and questions and answers are the input and the output. And he’d pass the Turing test. A Chinese person outside of the room would conclude that Myers understood the questions, because he always gave appropriate answers. But Myers understands nothing of the questions or the answers. They’re in Chinese. Myers (the processor) merely had syntax, but he didn't have semantics. He didn't know the meaning of what he was doing. There’s no reason to think that syntax (a computer program) can give rise to semantics (meaning), and yet insight into meaning is a prerequisite for consciousness. The Chinese Room analogy is a serious problem for the view that A.I. is possible.

    But imagine that artificial intelligence could be created, and Searle is wrong. Imagine that teams of the best computer scientists, working day and night for decades, finally produced a computer that had an awareness of itself. A conscious computer, with a mind! So, finally, P.Z. Myers and I could agree on something. Myers would be right. If a computer had a mind, we could infer two things:

    1) Matter is sufficient, as well as necessary, for the mind. The mind is an emergent property of matter.
    2) The emergence of mind from matter requires intelligent design.

    It’s not easy being a materialist.

    Sean Carroll Fails to Scale The Edge of Evolution (Part I): How Carroll Misrepresents Michael Behe's Arguments

    [Editor's Note: This is Part 1 of a 4-part response. The full response can be read here.]

    edgeofev.jpgA few months ago we discussed my review of Sean B. Carroll's book The Making of the Fittest, the book in which Carroll intimates that the salvation of our species hangs upon accepting Darwin. Carroll has now invoked his own religious metaphors in his review of Michael Behe's book The Edge of Evolution: The Search for the Limits of Darwinism in Science. While Michael Behe himself responds to Carroll here, I have a few comments which follow.

    Carroll postures himself as Thomas Henry Huxley debating Bishop Samuel Wilberforce in a famous 19th century debate over evolution. Carroll even opens the review by invoking Huxley, saying, "The Lord hath delivered him into mine hands." In his eagerness to attack Behe with the approval of "[t]he Lord," Carroll completely fails to engage Behe's actual arguments. Specifically, Carroll ignores that Behe quite contently acknowledges that at times multiple amino acids can change in a protein when there is a selective advantage for each mutation.

    Carroll's mistake begins when he claims Behe says that "multiple-amino acid replacements therefore can't happen":

    Behe states correctly that in most species two adaptive mutations occurring instantaneously at two specific sites in one gene are very unlikely and that functional changes in proteins often involve two or more sites. But it is a non sequitur to leap to the conclusion, as Behe does, that such multiple-amino acid replacements therefore can't happen. Multiple replacements can accumulate when each single amino acid replacement affects performance, however slightly, because selection can act on each replacement individually and the changes can be made sequential.

    (Sean B. Carroll, "God as Genetic Engineer," Science, Vol. 316:1427 - 1428 (June 8, 2007).)

    In Carroll's eagerness to attack Behe, he somehow fails to acknowledge that Behe makes precisely the same point throughout The Edge of Evolution. Behe repeatedly explains that when there is an advantage along each small step, evolution takes place. Early in his book Behe explains that "variation, selection, and inheritance will only work if there is also a smooth evolutionary pathway leading from biological point A to biological point B." (pg. 5) Behe later states:
    The Darwinian magic works well only when intermediate steps are each better (“more fit”) than preceding steps, so that the mutant gene increases in number I the population as natural selection favors the offspring…Yet its usefulness quickly declines when intermediate steps are worse than earlier steps and is pretty much worthless if several required intervening steps aren’t improvements).

    (Michael Behe, The Edge of Evolution: The Search for the Limits of Darwinism, pg. 112, (Free Press, 2007).)

    Behe makes this point impossible for any serious reviewer to miss:
    This point is crucial: If there is not a smooth, gradually rising, easily found evolutionary pathway leading to a biological system within a reasonable time, Darwinian processes won't work.

    (Behe, 2007, pg. 7.)

    Behe again concedes that evolution can sometimes occur when there are stepwise advantages along each mutational step of evolution:
    Although it hasn't yet occurred in nature, we shouldn't be at all surprised to see resistance of mosquitoes to the new insecticides arise and spread by Darwinian processes. The necessary preconditions are all there: tiny, incremental steps--amino acid by amino acid--leading from one biological level to another.

    (Behe, 2007, pg. 76.)

    In each of these quotes, Behe acknowledges that evolution can happen when there is an advantage along each small step of an evolutionary pathway. Carroll thus completely misrepresents Behe's position to claim that Behe says that mutations "can't happen," even when "each single amino acid replacement affects performance."

    But what happens when there is not an advantage gained at each step? This will be discussed as I recount Carroll's further mistakes in a subsequent post.

    June 25, 2007

    Can Biology Textbooks Recover from Over-Praising Darwin?

    They say that admitting a problem is the first step on the road to recovery. I'll admit that I'm something of a bookaholic: I'm constantly picking up books, especially books on evolution. It's been fascinating to read how Darwin is praised not only as the patron saint of “Western thought,” but sometimes as if he invented sliced bread and cupholders in cars.

    For example, Douglas Futuyma’s textbook Evolutionary Biology stated that “it was Darwin's theory of evolution … that provided a crucial plank to the platform of mechanism and materialism--in short, to much of science--that has since been the stage of most Western thought.” John Dupré rejoices that “Darwin’s theory provides the last major piece in the articulation of a fully naturalistic world-view and hence would, if fully appreciated, deliver a death blow to pre-scientific, theocentric cosmologies.” Stephen Jay Gould explained in his “In Praise of Charles Darwin,” that “Darwin has been the inspiration of my life and work.” Gould continued: “Let rejoice that we can identify, in our complex and ambiguous world, a man with such power of thought and such influence upon us all—a man who, at the same time, managed to be an exemplary human being.”

    Darwin surely has had a profound influence upon many people, but what were his skills a field scientist? Lisowski and Strauss’s Biology: The Web of Life gives the standard treatment, explaining that Darwin “pursued his love of nature when he sailed to the Galapagos Islands” and praised Darwin because his “observations there led to a theory that revolutionized biology.” (pg. 233)

    But David Tyler recently reports that a recent paper in Journal of Biological Education argues that some textbooks “have provided over-simplified and inaccurate accounts of Charles Darwin's contribution to the study of evolution over a period of many decades.” In short, they overstated Darwin’s field skills: “They have credited him with field skills and insight that he did not possess, and repeated several historical inaccuracies. Darwin's strength was as a synthesiser of information but, at least in his early life, he was not a particularly observant or careful field biologist. The specimens collected on his voyage on HMS Beagle were largely identified and analysed by others, but this is rarely acknowledged.” (Paul A. Rees, “The evolution of textbook misconceptions about Darwin,” Journal of Biological Education, Vol. 41(2):53-55 (Spring 2007), emphasis added.)

    It seems that some textbook authors have a strange problem over-magnifying the abilities and accomplishments of Darwin. The question is, will they admit they have a problem?

    Behe Responds to Propaganda Attacks Against The Edge of Evolution

    Fenton Communications, the left wing public relations firm that handles the Darwinist propaganda machine (along with groups like Moveon.org), undoubtedly has been anticipating the publication of Michael Behe’s new book, The Edge of Evolution, and helping to promote book reviews against it. Our friends at the Darwinist lobby, National Center for Science Education, are also on the case. They erroneously think that they can strangle this Hercules in his crib.

    In terms of the interests of real science, it is a shame, though no surprise, that the initial Darwinist reviews are defensive and tendentious.We have asked Dr. Behe, a senior fellow of Discovery Institute, to reply to some of them and he has agreed, starting with Jerry Coyne's review from The New Republic. Since the same journals that would not provide space for him to reply to his critics after Darwin’s Black Box was published are unlikely to afford him access now (they have made it clear that it is a high academic crime to allow Darwin critics to speak for themselves), we hope that objective readers will spend a little time to “tear and compare.”

    I am collecting stories of great scientists who were maligned in their time by the establishment journals and associations only to be vindicated later. Fortunately, Michael Behe, unlike some of his predecessors, is a relatively young man. He also has the merit of debating actual facts instead of hearsay and suppositions. The Edge of Evolution is outstanding.

    June 23, 2007

    Evolutionary Science: Deconstructing (Other Peoples’) Religious Beliefs

    bible_study_small.pngA recent study in American Scientist should ignite a blaze of research in evolutionary psychology. In Evolution, Religion, and Free Will, Gregory Graffin and William Provine report their survey of the religious beliefs of eminent evolutionary scientists. The results are striking. Evolutionary scientists hold views about God and religious belief that are radically at odds with those of most Americans. To evolutionary scientists such extreme variance from the mainstream views would normally raise fascinating questions about selection factors associated with atheist adaptation. Graffin and Provine's study should give rise to scores of papers about the evolutionary origins of atheism.

    But it won’t.

    There’s no doubt that the religious beliefs of evolutionary scientists are radically different from those of most Americans. Graffin and Provine’s study, called the Cornell Evolution Project, evaluated the results of a questionnaire returned by 149 leading evolutionary scientists about their religious beliefs. Eighty percent of evolutionary scientists were strict atheists. Another six percent expressed atheist beliefs, but left some room for ‘mystery'. About five percent were deists, and five percent had a more or less traditional belief in God. Religious beliefs of evolutionary scientists are the inverse of the beliefs of the American public, nearly ninety percent of whom believe in God.

    Yet the authors note that the great majority of evolutionary scientists (nearly ninety percent) see no conflict between religion and evolution. Ironically, this is not because evolutionary scientists believe that religion and science represent different ‘magisteria’, but because they believe that religious belief is a product of evolution. The vast majority of evolutionary scientists attribute belief in God to evolutionary mechanisms. That is, they deconstruct belief in God, and imply that it is merely an adaptive trait, or an accident— a spandrel. Evolutionary scientists' own scientific opinions about the evolutionary origin of belief in God correspond quite nicely to their own personal religious disbelief.

    But then what is the evolutionary origin of disbelief in God? If evolutionary scientists were unbiased in their approach to the study of religious belief, they would study the evolutionary origins of their own beliefs, as well as the origins of the beliefs of others. Despite the significant evolutionary questions raised by the adherence of a group of intelligent well-educated professionals to a fringe ideology—atheism— that has had a profound influence on the 20th century, evolutionary scientists show no interest in honest evolutionary introspection. That’s surprising if their interest is genuinely scientific, but quite unsurprising if they are advancing an implicit or explicit ideological agenda with their work.

    For evolutionary scientists, deconstructing religious belief is a method applied to other peoples' beliefs. Graffin and Provine, unpreturbed by this double standard and by the implications for the integrity of evolutionary science, point out the pragmatic implications of evolutionary scientists’ obvious theological bias:

    Eminent evolutionists…worry that the public association of evolution with atheism or at least nonreligion will hurt evolutionary biology, perhaps impeding its funding or acceptance…Seeing religion as a sociobiological feature of human evolution, while a plausible hypothesis, denies all worth to religious truths.

    Senator Sam Brownback recently pointed out in his New York Times essay that some aspects of evolutionary theory are atheistic theology, disguised as science. As Graffin and Provine’s study demonstrates, the evidence supporting Brownback’s assertion is overwhelming.

    June 22, 2007

    Pro-Darwin Biology Professor Laments Academia's "Intolerance" and Supports Teaching Intelligent Design

    Charles Darwin famously said, "A fair result can be obtained only by fully balancing the facts and arguments on both sides of each question." According to a recent article by J. Scott Turner, a pro-Darwin biology professor at SUNY College of Environmental Science and Forestry in Syracuse, New York, modern Neo-Darwinists are failing to heed Darwin's advice. (We blogged about a similar article by Turner in The Chronicle of Higher Education in January, 2007.) Turner is up front with his skepticism of intelligent design (ID), which will hopefully allow his criticisms to strike a chord with other Darwinists.

    Turner starts by observing that the real threat to education today is not ID itself, but the attitude of scientists towards ID: "Unlike most of my colleagues, however, I don't see ID as a threat to biology, public education or the ideals of the republic. To the contrary, what worries me more is the way that many of my colleagues have responded to the challenge." He describes the "modern academy" as "a tedious intellectual monoculture where conformity and not contention is the norm." Turner explains that the "[r]eflexive hostility to ID is largely cut from that cloth: some ID critics are not so much worried about a hurtful climate as they are about a climate in which people are free to disagree with them." He then recounts and laments the hostility faced by Richard Sternberg at the Smithsonian:

    It would be comforting if one could dismiss such incidents as the actions of a misguided few. But the intolerance that gave rise to the Sternberg debacle is all too common: you can see it in its unfiltered glory by taking a look at Web sites like pandasthumb.org or recursed.blogspot.com [Jeffry Shallit's blog] and following a few of the threads on ID. The attitudes on display there, which at the extreme verge on antireligious hysteria, can hardly be squared with the relatively innocuous (even if wrong-headed) ideas that sit at ID's core.

    (J. Scott Turner, Signs of Design, The Christian Century, June 12, 2007.)

    Turner on the Kitzmiller v. Dover Case
    Turner sees the Kitzmiller v. Dover case as the dangerous real-world expression of the intolerance common in the academy: "My blood chills ... when these essentially harmless hypocrisies are joined with the all-American tradition of litigiousness, for it is in the hand of courts and lawyers that real damage to cherished academic ideas is likely to be done." He laments the fact that "courts are where many of my colleagues seem determined to go with the ID issue” and predicts, “I believe we will ultimately come to regret this."

    Turner justifies his reasonable foresight by explaining that Kitzmiller only provided a pyrrhic victory for the pro-Darwin lobby:
    Although there was general jubilation at the ruling, I think the joy will be short-lived, for we have affirmed the principle that a federal judge, not scientists or teachers, can dictate what is and what is not science, and what may or may not be taught in the classroom. Forgive me if I do not feel more free.

    (J. Scott Turner, Signs of Design, The Christian Century, June 12, 2007.)

    Turner on Education
    Turner explains, quite accurately, that ID remains popular not because of some vast conspiracy or religious fanaticism, but because it deals with an evidentiary fact that resonates with many people, and Darwinian scientists do not respond to ID's arguments effectively:
    [I]ntelligent design … is one of multiple emerging critiques of materialism in science and evolution. Unfortunately, many scientists fail to see this, preferring the gross caricature that ID is simply "stealth creationism." But this strategy fails to meet the challenge. Rather than simply lament that so many people take ID seriously, scientists would do better to ask why so many take it seriously. The answer would be hard for us to bear: ID is not popular because the stupid or ignorant like it, but because neo-Darwinism's principled banishment of purpose seems less defensible each passing day.

    (J. Scott Turner, Signs of Design, The Christian Century, June 12, 2007.)
    Turner asks, “What, then, is the harm in allowing teachers to deal with the subject as each sees fit?” ID can't be taught, he explains, because most scientists believe that "normal standards of tolerance and academic freedom should not apply in the case of ID." He says that the mere suggestion that ID could be taught brings out "all manner of evasions and prevarications that are quite out of character for otherwise balanced, intelligent and reasonable people."

    As we noted earlier, hopefully Turner’s criticisms will strike a chord with Darwinists who might otherwise close their ears to the argument for academic freedom for ID-proponents. Given the intolerance towards ID-sympathy that Turner describes, let us also hope that the chord is heard but the strummer is not harmed.

    Guillermo Dekat, a law student and legal intern with Discovery Institute, helped contribute to this blog post.

    Will Darwinists try to pull a "Flock of Dodos" and Rewrite the History of Junk-DNA?

    JunkDNA.jpgJunk-DNA is clearly going the way of the dodo, in more ways than one. The film Flock of Dodos has become a textbook example of Darwinists attempting to rewrite history to erase their past scientific and textbook mistakes. Now that we're witnessing the apparent death of the "Junk-DNA" Neo-Darwinian paradigm, some pro-Darwin bloggers are already trying to rewrite history by claiming that Neo-Darwinism never supported the "junk-DNA" hypothesis after all. As one Scienceblogger wrote, "If you read evolgen you know that the term ‘Junk DNA’ is crap. From an evolutionary viewpoint it also seemed a bit peculiar to relegate most of the genome to non-functional status..." Just how valid is that statement? In 1995, Scientific American plainly expounded that under the Neo-Darwinian view, "[t]hese regions have traditionally been regarded as useless accumulations of material from millions of years of evolution." The view that non-coding DNA is "junk" has been adamantly promoted by TalkOrigins for years, as one leading contributor confidently asserted in 2001 that "[m]ost of human DNA is junk DNA." To be sure, over the years some rogue Darwinian biologists have bucked the consensus and promoted the view that non-coding DNA isn't mostly junk. But this doesn't change the fact that many leading Darwinists have had a long history of promoting the view that non-coding DNA is largely useless "junk." The comments above, and the quotes below document some examples of Darwinists asserting that non-coding DNA is thought to be "junk":

    Susumu Ohno, a leader in the field of genetics and evolutionary biology, explained in 1972 in an early study of non-coding DNA that, "they are the remains of nature's experiments which failed. The earth is strewn with fossil remains of extinct species; is it a wonder that our genome too is filled with the remains of extinct genes?"[1]

    In 1994, the authoritative textbook, Molecular Biology of the Cell, co-authored by National Academy of Sciences president Bruce Alberts, suggested (incorrectly!) that introns are "largely genetic 'junk'":

    Unlike the sequence of an exon, the exact nucleotide sequence of an intron seems to be unimportant. Thus introns have accumulated mutations rapidly during evolution, and it is often possible to alter most of an intron’s nucleotide sequence without greatly affecting gene function. This has led to the suggestion that intron sequences have no function at all and are largely genetic “junk”…[2]
    Soon thereafter, the 1995 edition of Voet & Voet's Biochemistry textbook explained that "a possibility that must be seriously entertained is that much repetitive DNA serves no useful purpose whatever for its host. Rather, it is selfish or junk DNA, a molecular parasite that, over many generations, has disseminated itself throughout the genome..."[3]

    In 1996, leading origin of life theorist Christian de Duve wrote: "The simplest way to explain the surplus DNA is to suppose that it is a parasite or at best a harmless but useless passenger, hitching a ride in the survival machines created by the other DNA."[4] Another leading biologist, Sydney Brenner argued in a biology journal in 1998 that: "The excess DNA in our genomes is junk, and it is there because it is harmless, as well as being useless, and because the molecular processes generating extra DNA outpace those getting rid of it."[5] (Richard Dawkins makes similar pronouncements that DNA is junk in an article after 1998, here.)

    Given the behavior of Darwinists in Flock of Dodos as they denied that Haeckel's embryo drawings have been misused in modern textbooks, one might suspect that Darwinists will try to rewrite history to claim their paradigm never called non-coding DNA "junk." Will junk-DNA truly go the way of the dodo?

    Citations:
    [1]. Susumu Ohno, "So much 'junk' DNA in our genome," Brook Haven Symposia in Biology, Vol. 23:366-370 (1972).

    [2]. Bruce Alberts, Dennis Bray, Julian Lewis, Martin Raff, Keith Roberts, and James D. Watson, Molecular biology of the Cell, pg. 373 (3rd Ed., 1994).

    [3]. Donald Voet & Judith Voet, Biochemistry, pg. 1138 (1995).

    [4]. Christian de Duve, Vital Dust: Life as a Cosmic Imperative, Basic Books, pg., 222-223 (1996).

    [5]. Sydney Brenner, "Refuge of spandrels," Current Biology, Vol. 8(19): R669 (1998).

    June 21, 2007

    Beckwith: Dawkins Unwittingly Endorses Purpose in Nature

    Over at the First Things blog On the Square, Francis Beckwith carefully shows how even Professor Dawkins cannot escape the common sense perception that the world is filled with agency, and those agents have a proper function. To get at all this, Beckwith describes Dawkins' lambasting of Kurt Wise, the young-earth creationist who did doctoral work under Stephen Jay Gould at Harvard.

    Dawkins writes:

    I find that terribly sad . . . the Kurt Wise story is just plain pathetic—pathetic and contemptible. The wound, to his career and his life’s happiness, was self-inflicted, so unnecessary, so easy to escape. . . . I am hostile to religion because of what it did to Kurt Wise. And if it did that to a Harvard educated geologist, just think what it can do to others less gifted and less well armed.
    Now Beckwith's point is not to defend young-earth creationism. Rather it is to call Dawkins to consistency. If one believes, as Dawkins does, that our perception of purpose in the natural world is merely an illusion, then one cannot chide another for not fulfilling his non-existant purpose. In other words, Dawkins' critique of Wise depends upon saying, "Dr. Wise has a purpose that he is not fulfilling, and I judge him by this universal standard to have erred in his acceptance of creationism." Dawkins must accept this hidden premise of purpose, or else he must revoke his critique of Wise. For if intrinsic purpose is an illusion, and human beings have no proper congnitive function from which Wise has deviated, then by what standard can Dawkins claim that Wise has erred?

    Beckwith notes that if design in living systems is really an illustion, then

    this means that [Dawkins'] lament for Wise is misguided, for Dawkins is lamenting what only appears to be Wise’s dereliction of his duty to nurture and employ his gifts in ways that result in his happiness and an acquisition of knowledge that contributes to the common good. Yet because there are no designed natures and no intrinsic purposes, and thus no natural duties that we are obligated to obey, the intuitions that inform Dawkins’ judgment of Wise are as illusory as the design he explicitly rejects. But that is precisely one of the grounds by which Dawkins suggests that theists are irrational and ought to abandon their belief in God.

    So if the theist is irrational for believing in God based on what turns out to be pseudo-design, Dawkins is irrational in his judgment of Wise and other creationists whom he targets for reprimand and correction. For Dawkins’ judgment rests on a premise that—although uncompromisingly maintained throughout his career—only appears to be true.


    As Daniel Dennett has said, Darwinism is a Universal Acid; it eats through all our old notions. If only Dawkins would take this to heart. To see a similar philosophical consequence of Darwinism that Dawkins has trouble maintaining, see this post.

    The End of Stories: the Evolutionary Psychology of Evolutionary Psychology

    icon_monkey_mirror.jpgThe journal Nature published an editorial recently in which the editors criticized Senator Sam Brownback’s New York Times essay What I Think About Evolution. Senator Brownback wrote:

    Man was not an accident and reflects an image and likeness unique in the created order. Those aspects of evolutionary theory compatible with this truth are a welcome addition to human knowledge. Aspects of these theories that undermine this truth, however, should be firmly rejected as atheistic theology posing as science.
    In reply to Brownback, the editors at Nature made some stunning assertions:

    With all deference to the sensibilities of religious people, the idea that man was created in the image of God can surely be put aside.
    and
    …the idea that human minds are the product of evolution is not atheistic theology. It is unassailable fact.
    We’ll leave aside for now the truth of the editors’ quite radical assertion that God is, pace Laplace, an unnecessary hypothesis. The editorial’s claim that the human mind can be explained adequately by evolutionary psychology raises an important point, and a question. Evolutionary psychologists have analyzed many aspects of human culture and thought, from altruism, to adultery, autism, rape, jealousy, monogamy, and of course, quite prominently, religion. Traditional views of human nature and culture have been assailed by evolutionary psychologists, who are never at a loss for theories as to how our values and traditions have been caused by Darwinian mechanisms—the struggle for survival of bipedal hominids on the savannah.

    The question raised is this: what is the evolutionary psychologists’ explanation for evolutionary psychology? More broadly, what is the evolutionary explanation for athiestic materialism? If, as the editors of Nature claim, our minds are merely the product of materialistic evolution, then the opinion that our minds are merely the product of materialistic evolution is itself just the product of evolution. The influence of atheistic materialism on modern culture and science is enormous, yet there are few if any studies on the evolutionary psychology of materialism as an ideology. Why are evolutionary psychologists so uninterested in the evolutionary origins of their own ideas?

    One could certainly construct, in the tradition of evolutionary psychology, fanciful stories to explain the emergence of atheistic materialism in hominids. To put a negative spin on it, perhaps atheistic materialism arose because it allowed humans to compete ruthlessly with their fellows, unencumbered by concerns about supernatural moral codes or eternal accountability. Social Darwinism could be explained in this way. To put a positive spin on it, perhaps atheistic materialism arose because it freed it’s adherents from religious conflict, and allowed them to engage in more survival-enhancing efforts. In evolutionary psychology, there is no end of stories.

    But, oddly, the stories do seem to end, right where atheistic materialism begins. Evolutionary psychologists seem loathe to deconstruct their own ideology. Why? If evolutionary psychology is a search for truth about the human mind, as the editors of Nature assert, it would seem that evolutionary psychologists would be falling all over themselves to understand the very idea that has led us to this epochal self-knowledge.

    Evolutionary psychologists’ disinterest in the evolutionary origins of their own ideology is remarkable. Why do evolutionary psychologists exempt their own ideology from evolutionary deconstruction? Perhaps we would learn that atheistic materialism is, like belief in God, an evolutionary spandrel, or merely a survival tactic to secure group cohesion.

    But atheistic materialism is where the evolutionary stories end. Why are evolutionary psychologists so reluctant to apply their own science to their own beliefs? Perhaps it’s because evolutionary psychology is atheistic theology, posing as science.

    June 20, 2007

    Discovery's Logan Gage in The Examiner: What does Being President Have To Do With Evolution?

    Discovery policy analyst Logan Gage was recently published in Washington DC's up and coming political paper, The Examiner, commenting on the recent flurry of debate among presidential candidates over evolution.

    "I’m curious, is there anyone on the stage that does not believe in evolution?” came the question at the first Republican presidential debate. Much has been made of the fact that three candidates raised their hands. The candidates were not allowed to elaborate, but what should they have said had they more time?

    What makes the original question difficult to answer yes or no is that “evolution” can mean many things. It can range from simple change over time, which no one disputes, to the specifically Darwinian idea that all of life’s diversity — from bald eagles to newborn baby boys — is owed to the mindless process of natural selection and random mutations and nothing more. As the eminent Harvard Paleontologist George Gaylord Simpson famously summarized it, “Man is the result of a purposeless and natural process that did not have him in mind.”

    It is this specific Darwinian claim that change in the biological world is not owed to intelligence, that it has no goal other than immediate survival, which the majority of Americans reject. We still believe in the quaint notion that we are created equal and endowed by our creator with certain unalienable rights. We believe that humanity was intended and is not the result of fortuitous mutations alone.

    As Pope Benedict XVI said in his first homily, “We are not some casual and meaningless product of evolution. Each of us is the result of a thought of God.” While Americans are wary of rehashing court trials over evolution, candidates are on safe, middle-of-the-road ground in rejecting the Darwinian proposition.

    But the question still arises, what does all this have to do with being president? Though he is not commander in science, the president can create an atmosphere of openness, freedom and honest dialog on this culturally hot subject. Many Americans are increasingly alarmed at the intolerance in this discussion at government and government-funded institutions.

    As reported in Nature, astronomer Guillermo Gonzalez was recently denied tenure at Iowa State University. Despite “dozens of articles in top journals” and “an important discovery in the field of extrasolar planets,” Gonzalez’s pro-intelligent design views appear to have cost him tenure.

    And as chronicled by a House subcommittee staff report, Richard Sternberg, a man with two doctorates in biology, faced harassment intended to force him to resign from the Smithsonian’s National Museum of Natural History after allowing the publication of a peer-reviewed article favoring intelligent design. This must stop. Good scientists should not be intimidated, especially using government funds, from expressing dissenting opinions.

    Finally, what about the contentious issue of the teaching of evolution in public schools? Americans know that if our students are to compete in an increasingly global marketplace, they must learn to think critically. And this has implications for how science, especially contentious scientific issues such as global warming, embryonic stem cell research and evolution, should be taught.

    Instead of dogmatically teaching kids only the arguments on one side of these debates, let’s encourage them to learn about the full range of informed views in the scientific community. Not only would this increase students’ knowledge of evolution and other scientific topics, but it would also allow them to weigh evidence and think critically about competing claims in science.

    In short, we’d be teaching them to be better scientists. If qualified teachers want to discuss the scientific evidence for and against key aspects of Darwin’s theory with their students, they should be defended rather than reprimanded.

    At the end of the day, surely presidential candidates can urge the American people to come together and discuss Darwin — and other scientific issues — thoroughly and openly. Students coming together to discuss and debate an idea that changed the world: What could be more American than that?

    Logan Paul Gage is a policy analyst with Discovery Institute in Washington.

    June 19, 2007

    Questions and Answers from Mike Behe About The Edge of Evolution

    On Mike Behe's Amazon author's page there is an enlightening 13 part Q&A in which he clarifies his position on a number of issues related to the debate over evolution and intelligent design. It is well worth reading, as is the new book. Here is a just a taste of the types of questions that are posed to the author:

    In Edge of Evolution you indicate that some of the evidence supporting common ancestry is pretty persuasive. Yet a number of scientists have questioned some of the evidence for common ancestry. Do you think it is beyond the pale for them to do so? In your mind is it scientific to question common ancestry?

    In my view it is certainly not “beyond the pale” for a scientist to question anything. Questioning and skepticism are healthy for science. I have no solutions to the difficult problems pointed to by scientists who are skeptical of universal common descent: ORFan genes, nonstandard genetic codes, different routes of embryogenesis by similar organisms, and so on. Nonetheless, as I see it, if, rather than Darwinian evolution, one is talking about "intelligently designed" descent, then those problems, while still there, seem much less insuperable. I certainly agree that random, unintelligent processes could not account for them, but an intelligent agent may have ways around apparent difficulties. So in judging the likelihood of common descent, I discount problems that could be classified as "how did that get here?" Instead, I give much more weight to the "mistakes" or "useless features" arguments. If some peculiar feature is shared between two species which, as far as we can tell, has no particular function, and which in other contexts we would likely call a genetic accident, then I count that as rather strong evidence for common descent. So, if one looks at the data in the way that I do, then one can say simultaneously that: 1) CD is very well supported; 2) grand Darwinian claims are falsified; 3) ID is confirmed; 4) design extends very deeply into biology.


    June 18, 2007

    Ideas, Matter, and Faith

    Split%20brain.gif
    P.Z. Myers' reply to my observation that ideas like altruism have no physical properties, like location, leaves a thoughtful observer to wonder: why do materialists have so much difficulty with this basic philosophical principle? It’s clear that ideas share no properties with matter. Ideas have no mass, or length, or temperature, or location. They’re immaterial. Clearly, under ordinary circumstances the brain is necessary for our ideas to exist, but, because matter and ideas share no properties, it’s hard to see how the brain is sufficient for ideas to exist.

    Yet Myers insists that altruism is located in the brain. He's had some trouble with my previous thought experiments, so I'll try another:

    Imagine that we can do complete split brain operations. We can separate the hemispheres of the brain completely, and not just partially as we can do now with corpus callosotomies. We can then further subdivide the tissue, keeping the brain parts biologically alive, in quarters, eighths, etc. Ignoring for the time being what would happen to the person’s consciousness (which brain part would mediate the first person experience of the original person, if any?), what would happen to the original person’s altruism? Would each one-eighth brain have one-eighth the altruism? Would each lobe contribute one-eighth of the previous brain’s annual contribution to the United Way? Would the altruism stay in one of the lobes- the left occipital lobe, and leave the other lobes heartless? What if we kept dividing? Is there an altruism neuron? The question seems nonsensical. Altruism, as an idea, doesn’t have ‘parts’. Unlike matter, ideas can’t be divided or localized.

    In everyday life, the brain is clearly necessary for ideas, but there are good reasons to think that that brain is not sufficient to cause ideas. This observation is very old; philosophers from Plato to Aquinas to Descartes to Popper and Eccles have known it. Myers seems not even to understand this basic paradox of the mind-body problem. The materialist assertion that ideas are caused entirely by brain matter, with no need for the existence of a soul or other incorporeal substance, is philosophically and scientifically incoherent. It is a materialistic dogma, an act of faith.

    The Nature Editorial: Either Intelligent Design is Science, or Senator Brownback Got it RIght

    cover_nature.jpg In a remarkable editorial, the editors of Nature recently responded to Senator Sam Brownback’s essay What I Think about Evolution in the New York Times. Senator Brownback wrote:

    The question of evolution goes to the heart of this issue. If belief in evolution means simply assenting to microevolution, small changes over time within a species, I am happy to say, as I have in the past, that I believe it to be true. If, on the other hand, it means assenting to an exclusively materialistic, deterministic vision of the world that holds no place for a guiding intelligence, then I reject it….

    Referring to materialistic evolutionary theories for the emergence of the human mind, Senator Brownback notes:

    …Aspects of these theories that undermine [the] truth, however, should be firmly rejected as an atheistic theology posing as science.

    Natures’ editors took Brownback to task for ‘crossing lines’:

    …there are lines that should not be crossed, and in a recent defence of his beliefs and disbeliefs in the matter of evolution, US Senator Sam Brownback (Republican, Kansas) crosses at least one.

    They asserted, with confidence in their science:

    Humans evolved, body and mind, from earlier primates. The ways in which humans think reflect this heritage…the idea that human minds are the product of evolution is not atheistic theology. It is unassailable fact.

    The editors assert that the emergence of the human mind without intelligent design is an ‘unassailable fact’. Perhaps the most remarkable thing about this claim, aside from the problems with their interpretation of the scientific evidence itself, is the admission by the editors that the question of intelligent design in biology can be adjudicated by the scientific method. If the evidence for or against intelligent design can be evaluated scientifically— as the editors at Nature firmly assert that it can— then intelligent design is a real scientific inference, albeit, according to the Nature editors, a mistaken one. And if they are asserting that intelligent design is mistaken from a non-scientific standpoint, then the editors are advancing an atheistic theology, as Brownback pointed out.

    The mainstay of the materialists’ argument against intelligent design has been that it isn’t science. Yet, as the Nature editors inadvertently demonstrate so clearly, the materialists’ argument against intelligent design is self-refuting; they argue that intelligent design isn’t science, and that it’s scientifically wrong. Yet if intelligent design is scientifically wrong— if it is an 'unassailable fact' that the human mind is the product of evolution, not intelligent design— then the design inference can be investigated (and, they claim, refuted) using the scientific method. Then intelligent design is science.

    Either the conclusion that the editors reached is the result of a scientific analysis of the design inference, or the conclusion that the editors reached is the result of a non-scientific analysis of the design inference, which would be, as Senator Brownback observed, atheistic theology posing as science.

    Either intelligent design is science, or Senator Brownback got it right.

    June 17, 2007

    Dual-Coding Genes "Nearly Impossible by Chance" — How Would Francisco Ayala Respond?

    We mortals are easily impressed by palindromes – words or phrases that have the same spelling forwards and backwards. But try writing a sentence which has two different meanings: One meaning is gained when you start with one letter of the first word, and then an entirely different meaning is understood when you start reading with the second letter of the first word. Such a sentence would be most impressive, but what if such "sentences" existed in our DNA?

    Leading evolutionary biologist Francisco Ayala recently wrote in Proceedings for the National Academy of Sciences (PNAS) that "Chance is an integral part of the evolutionary process." Ayala then explained why he thinks Darwinian evolution is right and ID is wrong: "Biological evolution differs from a painting or an artifact in that it is not the outcome of preconceived design. The design of organisms is not intelligent but imperfect and, at times, outright dysfunctional.” ("Darwin's greatest discovery: Design without designer," PNAS, 104:8567–8573 (May 15, 2007), emphasis added.) This questionable standard and conclusion is Ayala’s punchline against ID.

    What, then, does Ayala think of organisms whose design is intelligent and highly functional? A recent article in Public Library of Science discussed how dual-coding genes – genes which overlap and code for multiple proteins when read through different reading frames – are "hallmarks of fascinating biology" and "nearly impossible by chance" to the extent that evolutionary biologists have held "skepticism surrounding" their very existence. Now it seems they do exist, and they don't quite match Ayala's vision of biology, where "[c]hance is an integral part" of the "design of organisms is "dysfunctional" and "not intelligent." As the article, "A First Look at ARFome: Dual-Coding Genes in Mammalian Genomes," states:

    Coding of multiple proteins by overlapping reading frames is not a feature one would associate with eukaryotic genes. Indeed, codependency between codons of overlapping protein-coding regions imposes a unique set of evolutionary constraints, making it a costly arrangement. Yet in cases of tightly coexpressed interacting proteins, dual coding may be advantageous. Here we show that although dual coding is nearly impossible by chance, a number of human transcripts contain overlapping coding regions. Using newly developed statistical techniques, we identified 40 candidate genes with evolutionarily conserved overlapping coding regions. Because our approach is conservative, we expect mammals to possess more dual-coding genes. Our results emphasize that the skepticism surrounding eukaryotic dual coding is unwarranted: rather than being artifacts, overlapping reading frames are often hallmarks of fascinating biology.

    (Wen-Yu Chung, Samir Wadhawan, Radek Szklarczyk, Sergei Kosakovsky Pond, Anton Nekrutenko, "A First Look at ARFome: Dual-Coding Genes in Mammalian Genomes," PLOS Computational Biology, Vol. 3(5) (May, 2007), emphasis added.)

    Does this sound like a "dysfunctional" process that is "not intelligent" in its design?

    June 16, 2007

    Public Schools Still Using PBS’s Evolution

    Many public schools in the U.S. are still showing biology students the 2001 PBS Evolution series. This 8-hour propaganda extravaganza — like most modern biology textbooks — distorts and exaggerates the evidence to convince people that Darwinism is true. When the series was first released, Discovery Institute published a detailed 150-page Viewer’s Guide exposing the distortions and exaggerations. The Guide includes extensive references to the scientific and popular literature, as well as eight activities that teachers and students will find helpful in critically analyzing this work of pro-Darwin propaganda.

    Here is an excerpt from the Introduction to Getting the Facts Straight: A Viewer’s Guide to PBS’s Evolution:

    The controversy over Darwin’s theory of evolution has never been more intense. The American people – and especially American schoolchildren – deserve to know what the fuss is all about. They deserve to know what the evidence shows, what scientists really think, and why – after all these years – there is still widespread opposition to Darwinian evolution.

    American public television can and should be used to educate people about this important controversy. The seven-part Evolution series, produced for public television by Clear Blue Sky Productions and the WGBH/NOVA Science Unit, could have been an important contribution in this regard. But Evolution is a work of advocacy, an advertisement not just for Darwinism, but for some of its more extreme manifestations. It distorts the biological evidence, mischaracterizes historical facts, systematically ignores the views of scientists, and misrepresents Darwin’s critics in order to convince the American people that evolution is absolutely true – and indispensable to our daily lives.

    This Viewer’s Guide has been prepared to correct this one-sided presentation. Where Evolution distorts or ignores the facts, this Guide supplies them. Where Evolution ignores or misrepresents its critics, this Guide lets them speak for themselves. Although Evolution promotes the stereotype that all opponents of Darwin’s theory are biblical literalists, this Guide was not written to defend biblical literalism, but to defend honest science. It is simply based on the premise that the American people deserve to hear the truth – especially from the television network that they are supporting with their tax money.


    Getting the Facts Straight is available for $7.95 (+ S&H) here.

    June 15, 2007

    Intelligent Design and the Death of the "Junk-DNA" Neo-Darwinian Paradigm

    JunkDNA.jpgTwo recent news articles are discussing the death of the junk-DNA icon of Neo-Darwinism. Wired Magazine has an article pejoratively titled "One Scientist's Junk Is a Creationist's Treasure" that emphasizes the positive point that intelligent design has made successful predictions on the question of "junk-DNA." The article reports:

    [A] surprising group is embracing the results: intelligent-design advocates. Since the early '70s, many scientists have believed that a large amount of many organisms' DNA is useless junk. But recently, genome researchers are finding that these "noncoding" genome regions are responsible for important biological functions.
    The Wired Magazine article then quotes Discovery Institute's Stephen Meyer explaining that this is a prediction of intelligent design that was largely unexpected under neo-Darwinian thought:
    "It is a confirmation of a natural empirical prediction or expectation of the theory of intelligent design, and it disconfirms the neo-Darwinian hypothesis," said Stephen Meyer, director of the Center for Science and Culture at the Discovery Institute in Seattle.

    The Wired Magazine article openly and unashamedly confuses intelligent design with creationism, but it does admit that ID proponents are making positive predictions about the scientific data:

    Advocates like Meyer are increasingly latching onto scientific evidence to support the theory of intelligent design, a modern arm of creationism that claims life is not the result of natural selection but of an intelligent creator. Most scientists believe that intelligent design is not science. But Meyer says the opossum data supports intelligent design's prediction that junk DNA sequences aren't random, but important genetic material. It's an argument Meyer makes in his yet-to-be-published manuscript, The DNA Enigma.
    Another article in the Washington Post similarly discusses the death of the junk-DNA paradigm of Neo-Darwinism:
    The first concerted effort to understand all the inner workings of the DNA molecule is overturning a host of long-held assumptions about the nature of genes and their role in human health and evolution. ... The findings, from a project involving hundreds of scientists in 11 countries and detailed in 29 papers being published today, confirm growing suspicions that the stretches of "junk DNA" flanking hardworking genes are not junk at all. But the study goes further, indicating for the first time that the vast majority of the 3 billion "letters" of the human genetic code are busily toiling at an array of previously invisible tasks.

    (Rick Weiss, "Intricate Toiling Found In Nooks of DNA Once Believed to Stand Idle," Washington Post, June 14, 2007)

    The Washington Post article explains that scientists are finally "being forced to pay attention to our non-gene DNA sequences." What were the consequences of their failure to suspect function for junk-DNA? The article explains how there may be real-world medical consequences of the failure to presume function for non-coding DNA:
    But much of it seems to be playing crucial roles: regulating genes, keeping chromosomes properly packaged or helping to control the spectacularly complicated process of cell division, which is key to life and also is at the root of cancer. .... [S]everal recent studies have found that people are more likely to have Type 2 diabetes and other diseases if they have small mutations in non-gene parts of their DNA that were thought to be medically irrelevant.
    Could Neo-Darwinism have stopped science from investigating the causes of these medical problems?

    Intelligent Design has Long Predicted This Day
    Proponents of intelligent design have long maintained that Neo-Darwinism's widely held assumption that our cells contain much genetic "junk" is both dangerous to the progress of science and wrong. As I explain here, design theorists recognize that "Intelligent agents typically create functional things," and thus Jonathan Wells has suggested, "From an ID perspective, however, it is extremely unlikely that an organism would expend its resources on preserving and transmitting so much ‘junk'." [4] Design theorists have thus been predicting the death of the junk-DNA paradigm for many years:

    As far back as 1994, pro-ID scientist and Discovery Institute fellow Forrest Mims had warned in a letter to Science[1] against assuming that 'junk' DNA was 'useless.'" Science wouldn't print Mims' letter, but soon thereafter, in 1998, leading ID theorist William Dembski repeated this sentiment in First Things:

    [Intelligent] design is not a science stopper. Indeed, design can foster inquiry where traditional evolutionary approaches obstruct it. Consider the term "junk DNA." Implicit in this term is the view that because the genome of an organism has been cobbled together through a long, undirected evolutionary process, the genome is a patchwork of which only limited portions are essential to the organism. Thus on an evolutionary view we expect a lot of useless DNA. If, on the other hand, organisms are designed, we expect DNA, as much as possible, to exhibit function. And indeed, the most recent findings suggest that designating DNA as "junk" merely cloaks our current lack of knowledge about function. For instance, in a recent issue of the Journal of Theoretical Biology, John Bodnar describes how "non-coding DNA in eukaryotic genomes encodes a language which programs organismal growth and development." Design encourages scientists to look for function where evolution discourages it.

    (William Dembski, "Intelligent Science and Design," First Things, Vol. 86:21-27 (October 1998))

    In 2002, Dr. Richard Sternberg surveyed the literature and found extensive evidence for function of certain types of junk-DNA and argued that "neo-Darwinian 'narratives' have been the primary obstacle to elucidating the effects of these enigmatic components of chromosomes."[1] Sternberg concluded that "the selfish DNA narrative and allied frameworks must join the other ‘icons’ of neo-Darwinian evolutionary theory that, despite their variance with empirical evidence, nevertheless persist in the literature.”[2]

    Soon thereafter, an article in Scientific American explained that “the introns within genes and the long stretches of intergenic DNA between genes ... ‘were immediately assumed to be evolutionary junk.’” John S. Mattick, director of the Institute for Molecular Bioscience at the University of Queensland in Brisbane, Australia was then quoted saying this might have been “one of the biggest mistakes in the history of molecular biology.”[3]

    The next year, in 2004, pro-ID molecular biologist Jonathan Wells argued that "The fact that ‘junk DNA’ is not junk has emerged not because of evolutionary theory but in spite of it. On the other hand, people asking research questions in an ID framework would presumably have been looking for the functions of non-coding regions of DNA all along, and we might now know considerably more about them."[4]

    Then in 2005, Sternberg and leading geneticist James A. Shapiro conclude that “one day, we will think of what used to be called ‘junk DNA’ as a critical component of truly ‘expert’ cellular control regimes.”[5] It seems that day may have come.

    It seems beyond dispute that the Neo-Darwinian paradigm led to a false presumption that non-coding DNA lacks function, and that this presumption has resulted in real-world negative consequences for molecular biology and even for medicine. Moreover, it can no longer seriously be maintained that intelligent design is a science stopper: under an intelligent design approach to investigating non-coding DNA, the false presumptions of Neo-Darwinism might have been avoided.

    Citations:

    [1] Forrest Mims, Rejected Letter to the Editor to Science, December 1, 1994.

    [2] Richard v. Sternberg, "On the Roles of Repetitive DNA Elements in the Context of a Unified Genomic– Epigenetic System," Annals of the New York Academy of Sciences, Vol. 981: 154–188 (2002).

    [3] Wayt T. Gibbs, “The Unseen Genome: Gems Among the Junk,” Scientific American (Nov. 2003).

    [4] Jonathan Wells, “Using Intelligent Design Theory to Guide Scientific Research,” Progress in Complexity, Information, and Design, 3.1.2 (Nov. 2004).

    [5] Richard v. Sternberg and James A. Shapiro, “How Repeated Retroelements format genome function,” Cytogenetic and Genome Research, Vol. 110: 108–116 (2005).

    Science Historian Sees Behe's Edge of Evolution as a Cultural Earthquake

    Will the summer of 2007 be remembered for largest Darwin-related cultural earthquake to date? Dr. Thomas Woodward, author of Darwin Strikes Back, thinks it just might.

    Beyondthenews.com today published Woodward's review of Behe's The Edge of Evolution. Woodward says the book "is shaping up as a major turning point in the growing controversy between Darwinian evolution and the movement known as Intelligent Design."

    Behe's first ID book, Darwin's Black Box, broke new ground in the debate over natural selection, and Woodward sees Edge of Evolution doing the same in regards to random mutations.

    For example, Behe asks, where can we draw the line between what random mutations can do in biology and what they cannot do? To his own surprise, new genetic data recently unearthed from the cellular hard drives of humans and microbes led him to “draw the line” much lower on the scale of complexity than where he would have just ten years ago. Random mutations just break things; they don’t make things.
    Read the full review at Beyondthenews.com.

    ‘Verizon Deniers’ Find a Cellphone

    CellPhoneOnBeach.jpg

    Is the brain alone necessary and sufficient to cause the mind? Here’s a thought experiment:

    Imagine scientists living on an isolated island who have developed sophisticated science and culture, with one exception: they deny that telecommunication is possible. For assorted reasons, they deny that the human voice can be transmitted through space, except as vibrations in air. We’ll call this civilization the ‘Verizon Deniers.’

    One day, they find a cell phone (it dropped from a plane or something). They turn it on, and they hear things. They hear hissing, cracking, and what sounds like voices!

    The Verizon deniers are amazed! So it's off to the lab, and soon the Verizon denier scientists have the answer. They show that all kinds of things — chemicals, mechanical impacts, electrical interference — can change or ablate the voices. They find that certain sounds the voices make are consistently associated with patterns of activation in the cell phone circuits. They found that some aspects of the voices — tone, amplitude, etc. — are localized within the cell phone. They conclude that the voices are simply an emergent property of the cell phone circuits!

    However, one of the scientists, a Verizon accepter, isn’t so sure. He says:

    “What if the cell phone is necessary for all of the noises, but only sufficient for some? What if some of the noises in the phone are actual voices of living people, and are merely transmitted through the phone, but not caused by it?”

    The Verizon deniers say: “How can you prove it?”

    So the Verizon accepter goes to work. He studies the properties of all of the noises the phone made. Some of the noises, like the hiss or the cracks, he can explain as an emergent property of the phone — just oscillations from the circuitry transmitted through the speaker to the air.

    But the voices are different. The sound of the voices certainly has some properties like those of the circuit — frequency, amplitude, power, etc — but there's more to them. They have meaning. These ‘voice’ noises express anger, love, purpose, judgment — all properties that are not inherent to electrical components.

    So the Verizon accepter decides that the voices are not caused entirely by the cell phone. He concludes:

    1) The cell phone is necessary for all of the noises
    2) The cell phone is sufficient to produce noises that only have properties — like frequency and amplitude — that are shared with the circuitry in the cell phone itself
    3) The cell phone is insufficient to fully account for the noises (i.e., the voices) that have meaning, because meaning is not a property of matter. The only thing that can cause meaning is a person.

    The Verizon accepter shows that there is a method of determining whether the mind can be caused entirely by matter. If the mind has a property, such as meaning, that is not a property of matter, then matter, while perhaps necessary to the mind, is insufficient to cause it.

    Too simple? I propose that any credible theory of the mind must at least provide a basis for discerning that a voice from a cell phone is generated by a person, not the phone. It’s a kind of inverse Turing test — it tests the theory, not the machine. As I see it, none of the materialistic theories of the mind would provide a clear basis for identifying the voice in a cell phone as a person and not as an emergent property of the phone. If a theory can't get a cell phone right, I don't trust it with the mind.

    So, you ask, what was the denouement of the story about the scientists on the island? Well, things went well for the Verizon accepter, until he applied for tenure…

    June 14, 2007

    Plain Talk About Mike Behe's New Book, The Edge of Evolution

    The folllowing is from a sympathetic academic observer:

    Having watched the spectacle of the Panda's Thumb feeding frenzy, not to mention the Sean Carroll and Jerry Coyne reviews (and more are coming), I wanted to pass on a bit of plain talk about Mike Behe's new book, The Edge of Evolution (EE). 1. Don’t expect the sort of reviews that met Darwin’s Black Box (DBB) — but not because EE is inferior to DBB. Far from it.
    In 1996, when DBB appeared, Mike was a largely unknown biochemistry professor. Now the name “Michael Behe” is known worldwide, by millions, who either love and admire Mike, or wish he were dead. EE will face a MUCH tougher reception than DBB, simply from the intervening 11 years of controversy. Reviewers will be openly gunning for Mike, mainly because of what they perceive him to represent. A writer like Mike, who challenges received scientific opinion, gets one chance to meet his readership without prejudice. Mike got that chance with DBB. In June 2007, by contrast, it's open season on a famous dissenter.

    2. But Mike will come out of the hail of bullets in good shape. Here's why.

    The experimental (observational) evidence strongly supporting Mike’s arguments in EE is far more extensive than most of his readers, including many professional biologists, will know. Mike could include only a small portion of that evidence in his new book. Moreoever -- and this is the great beauty of EE -- Mike’s arguments are rich with testable implications, in terms of current model systems and data from populations genetics, etc. Thus, unlike the “Well, you say Darwinism can’t, but I say it can” character of much of the debate surrounding DBB (he said, she said, who knows?), EE focuses the biological community’s attention on what can actually be known about the limits of Darwinian processes, with Mike arguing that we can know and detect those limits. The main point is this: If Mike is right that we can know, or locate, the edge of Darwinian processes, the question can be settled with evidence. In other words, the debate in months to come won’t be “Who knows what evolution might have done in the deep mists of time?”

    Rather, Mike can say, hey -- let’s go to the evidence. The coming debate around EE thus promises to be very fruitful for ID, and for getting the biological (and larger) community to think about what evolutionary theory has actually demonstrated, versus what it has assumed.

    3. READ THE BOOK before you take seriously wild-eyed, ill-informed criticisms of it. And when you do read reviews, factor in point (1), above. Let’s not be naïve and think Mike is drawing dispassionate, open-minded reviewers. There will be a great deal of rhetorical mud and misdirection to wash off, in the months to come, before the genuine biological issues can be properly addressed.

    EE opens up a wide range of important questions for biology. Once the mud is washed off, and the evidence engaged, we’ll find the center of this debate will have moved again, as it did with DBB.

    Please Help P.Z. Myers Find Altruism!

    realtime_diff_GPS.jpg

    P.Z. Myers, materialistic neuroscientist and blogger at Pharyngula, is looking for altruism. Responding to my observation that ideas like altruism can’t be caused entirely by neurochemistry because ideas don’t share properties (like location) with matter, Myers asserted:

    …altruism does have a location. It’s the product of activity in [the] brain. Where else would it be, floating in the air, in [the] left foot, or nonexistent?

    Let’s take a closer look at Myers' idea — that altruism, an immaterial idea, is located in the brain. What does it mean to say that altruism is located in the brain?

    If altruism is located in the brain, then some changes in location of the brain must, to use a mathematical term, 'map' to changes in altruism. That is, if you move your brain, you move your altruism in some discernable way. And ‘moving’ altruism means changing its properties. It won’t do to say that moving altruism changes its property of ‘location,’ because ‘location’ of altruism is the issue. That begs the question.

    Does altruism have location? The brain does; it can move in space by moving in any of six degrees of freedom: in a Cartesian system, it can move in the x, y, or z direction, or it can pitch, yaw, or roll. These are the movements possible for a material body.

    Now moving your brain through ‘x,y,z’ or ‘pitch, yaw, or roll’ does change its material properties, which are located in the brain. The pulse pressure in your brain tissue is greater when you’re recumbent than when you’re standing (pitch). The venous pressure is lower when you’re standing than when you’re recumbent. Tilting your head to the left (roll) tilts the vector of carotid arterial blood flow to the left. Even material things that are less tangible, like neuronal action potentials, change with brain movement. Action potentials have direction, and can be described using spatial vectors. When you tilt your head, you tilt the vectors along which your axons transmit action potentials. When you turn your head 30 degrees to the left (yaw), you turn the direction of propagation of action potentials 30 degrees to the left too. In this sense, material changes in the brain can map to changes in location of the brain.

    But how does moving your brain change your altruism? Do properties of altruism, like benevolence, have pitch, yaw or roll? Is generosity measurably and reproducibly different when you (and your brain) are on the north, rather than the south, side of the room? Are you measurably more or less charitable if you tilt your head 30 degrees to the left? If you walk around the room does your altruism change in a reproducible way? If you stand up, is your altruism different that when you’re sitting?

    For altruism to be located in the brain, changes in altruism must map, in some reproducible way, to changes in brain location. But it’s obvious that no property of altruism maps to brain location. If no property of altruism maps to brain location, then altruism is independent of brain location, and it’s nonsense to say that altruism is located in the brain. Altruism is completely independent of location, so it can’t be located in the brain, or anywhere. It can’t be ‘located’ at all.

    Myers makes a category error. Matter and ideas share no properties. Ideas like altruism aren’t material, so they can’t have a location. Altruism has no yaw or pitch or roll. Location is a property of matter, not ideas. Benevolence is a property of ideas, not matter. Matter can't be benevolent, and ideas can't have location. And matter can’t, by itself, cause ideas, because they share no properties.

    Clearly matter can influence ideas (ethanol makes us think differently), and ideas can influence matter (we can move our legs on purpose). No one knows how matter and ideas influence each other. Dualism, which is the theory that the mind and matter are separate substances, has its own problems, the most serious of which is: how can mind and matter interact if they are completely different substances? I favor dualism, because I accept the reality of immaterial causes, and dualism is consistent with our intuitive and nearly universal belief in the existence of the soul. Although dualism obviously leaves explanatory gaps, it retains free will and intentionality, which seems to accord with reality. Implicit or explicit acceptance of free will and intentionality is a precondition for a meaningful understanding of the mind-body problem. Our opinions have no meaning if they're determined entirely by neurochemistry. Norepinephrine doesn't have 'meaning.'

    Acceptance of free will and intentionality is a precondition for any meaningful discussion of reality. Strictly materialistic neuroscience is nonsense, because it inherently denies the existence of free will and of intentionality, and it entails basic category errors, such as the belief that ideas have locations. A strictly materialistic explanation of the mind is an oxymoron, because the mind isn't material. A real understanding of the mind must be open to immaterial causes.

    June 13, 2007

    Chronicle of Higher Education Promotes Misinformation about Guillermo Gonzalez’s Publication Rate

    ID Proponents Need Not ApplyLet the rewriting of history begin. The Chronicle of Higher Education’s blog recently carried a post claiming that Guillermo Gonzalez was denied tenure by Iowa State University (ISU) largely because “Mr. Gonzalez’s publication record has dropped off considerably since he was hired at Iowa State.” But this statement is a gross distortion of Dr. Gonzalez’s real publication record.

    A simple decrease in publications is meaningless without reference to expected standards of publication for teaching faculty, departmental publication standards, or the publication rates of similarly situated faculty. A fair assessment would ask how Gonzalez compared to other astronomers in his department since the year he joined ISU (2001), especially compared to those astronomers that have already been granted tenure. And the answer to that question is clear: According to the Smithsonian/NASA Astrophysics Data System, Gonzalez has published 34 publications since 2001 and his normalized publication score is 2nd among all astronomers in his department. (Click here for the methodology on his absolute publication count.) In fact, he beats out all tenured astronomers in his department in the normalized number of publications since 2001! We’ve already highlighted that Gonzalez has the highest normalized citation count among ISU astronomers over the same time period. Moreover, even if one counts only the refereed articles Gonzalez published after coming to ISU, he significantly exceeded his own department's stated standard of the number of peer-reviewed publications needed for tenure. These significant comparisons show just how unfair (and irrelevant) the claim is that Gonzalez's publication rate “dropped off” compared to his pre-ISU days. The "drop off" claim is additionally unfair for reasons previously outlined by John West:

    the insinuation that Gonzalez has somehow become unproductive as a scholar since coming to ISU is utterly false. It is true that he has published fewer peer-reviewed articles each year while at ISU than he did as a postdoctoral researcher at the University of Washington. But that is perfectly normal. A postdoctoral researcher who has no teaching obligations obviously can produce more journal articles per year than someone who must teach classes and engage in various forms of university service. The relevant fact is that Gonzalez has continued to produce multiple new peer-reviewed journal articles each year, even while co-authoring a major college astronomy textbook, and even while teaching his classes and fulfilling the normal requirements for university service at ISU. It is notable that Gonzalez’s department nominated him for an “early achievement” award in research at ISU in 2004. Significantly, that nomination came before the controversy erupted on campus over the publication of The Privileged Planet.

    (Chronicle of Higher Education Unearths New Evidence in Support of Gonzalez, But Tries to Discount It)

    In short, Gonzalez beats all tenured ISU astronomers in both normalized publication count and normalized citation count since the year he joined ISU. Does this sound like Gonzalez's department had any legitimate grounds for complaining about his publication record? Perhaps there are better explanations for why he was denied tenure:

  • Two astronomy faculty, including the chair of the ISU Department of Physics and Astronomy, admitted that ID played a role in their choice to deny tenure to Dr. Gonzalez.
  • Two faculty who voted on Dr. Gonzalez’s tenure have ties to a statement denouncing intelligent design as “creationist pseudoscience”.
  • A tenured physicist in Dr. Gonzalez's department who voted on Gonzalez’s tenure has now publicly admitted that he voted against Gonzalez solely because he disagreed with Gonzalez’s view that intelligent design is science.
  • 120 ISU faculty signed a petition condemning intelligent design in 2005 and urging all other ISU faculty to do likewise.




    Methodology for Determining Publication Count
    1. Go to the Smithsonian/NASA Astrophysics Data System.
    2. Put "Gonzalez, Guillermo" in the Authors field, and check the box selecting "Exact Name Matching."
    3. In the "Publication Date Between" field, select from 01/2001 through 05/2007. The results can be seen here.

  • Recent Comments on Flock of Dodos at Telic Thoughts

    Links with more Information:
  • Hoax of Dodos, a response to inaccuracies in Flock of Dodos
  • Haeckel's Bogus Embryo Drawings (Clip on YouTube)
  • There is a thread at Telic Thoughts discussing the Flock of Dodos [FOD] film where I posted a comment last week. I posted the comment after a commenter named "Randy" asked a question about Discovery Institute's responses to the film. I repost the comment below because it clearly explains my position regarding the film, and also provides various useful links for interested readers to visit for more information:
    An early commenter named "Randy" asked an interesting question. Having watched FOD a few times now, I understand that many people (including me) will enjoy its humor and its apparent plea for honest communication. But in the final analysis the film does not practice its own lesson: Flock of Dodos promotes a subtle but unambiguous stereotype that ID-proponents are publicity-obsessed liars.

    [Note: if you don't believe me because you blissfully hoped that a light-hearted movie could never intend a malicious message, this point was not lost on Pandas Thumb, which reported that one of FOD's "important points" is that "the intelligent design movement consists of nothing but lies invented for a public relations campaign."]

    To give one example directly from the film, in FOD Randy Olson says ID is "emerging from public relations firms [and] understands the need to tell simple clean stories not constrained by the truth." Although Randy Olson tries to avoid directly using the word "liar" (probably for legal reasons), he all but uses the word through the imagery (like the scene juxtaposing Icons of Evolution next to a tabloid), and other discussions of ID proponents.

    But the above quote from the film is very representative of the film's pervasive anti-ID stereotype. FOD says ID is merely (1) "emerging from public relations firms" and (2) "understands the need to tell simple clean stories not constrained by the truth."

    I like Telic Thoughts because it seems to me that facts matter to people here a lot more than the preferred stereotypes of ID-critics. Let's break Randy Olson's stereotype down:

    (1) When Olson says ID is "emerging from public relations firms," this claim comes from the part in his film where he claims that Discovery Institute has a huge $5 million budget which is largely spent on public relations, but not science. This claim is false on many levels. See - here for a rebuttal to FOD's misrepresentations of Discovery Institute's budget.

    (2) When Olson says ID is "not constrained by the truth" (i.e. all but saying ID proponents are liars), this comes from the part of his film where he claims Jonathan Wells falsely claimed that modern biology textbooks have used Haeckel's fraudulent embryo drawings to promote evolution. Despite the confident-sounding puffing on this issue from Olson and his friends (like P.Z. Myers), FOD's claims about Haeckel are effectively rebutted by mainstream publications by acknowledging that Haeckel's drawings are reproduced in modern textbooks, and sometimes even noting that they are in there being used to promote evolution, including:

  • Stephen Jay Gould, "Abscheulich! (Atrocious!): Haeckel's Distortions did not help Darwin," Natural History Magazine (March, 2000).
  • Michael K. Richardson et al., "There is no highly conserved embryonic stage in the vertebrates: implications for current theories of evolution and development," Anatomy and Embryology, Vol. 196:91–106 (1997).
  • James Glanz, "Biology Text Illustrations More Fiction than Fact," New York Times (April 8, 2001).

    (Ah for the good-old days these papers represent, when Darwinists admitted that modern textbooks have had problems with their usage of Haeckel's drawings, and they were trying to fix things and move on with dignity. Now Randy Olson and his friends have tried a different tack by denying that modern textbooks have had any problems in their usage of Haeckel and accusing ID-proponents of being "not constrained by the truth" (i.e. lying) for claiming the textbooks have had problems.)

    "Randy" asked why Discovery Institute has responded to the flim. Interestingly, I can't find any responses from Discovery posted prior to about February, 2007, and the film came out in April / May of 2006. But bear in mind that Randy Olson started this current debate by making false claims in FOD attacking Jonathan Wells and Discovery Institute. So I don't think anyone can blame Discovery Institute for defending Jonathan Wells and refuting with great detail and many examples from modern textbooks Olson's false information. Some of Discovery Institute's refutations of Olson's claims regarding Haeckel's drawings and Jonathan Wells can be read here, here, here, here, here, here, here, here, here, here, and here. I know there's a lot there, but I encourage readers who watched FOD to check out some of these rebuttals and compare them to what FOD claims.

    In the end, I think Mike Gene quite accurately captures "the core problem" faced by some Darwinists that FOD targets to encourage them to better cover-up their elitist dogmatism when opposing ID. But unfortunately I think Mike Gene misses the underlying stereotype in the film: On the surface Flock of Dodos provides an entertaining show and purports to have a good message for all. But one of its main underlying messages is essentially this:

    ID proponents are either stupid bumpkins or rich, slick liars, but if you're a Darwinist, you shouldn't say that explicitly publicly of you’ll look elitist and be counterproductive by turning people off from evolution.

    Olson leads his fellow Darwinists by example by trying to portray ID-proponents exactly in that light and getting that message across without sounding elitist and dogmatic. But the anti-ID stereotype message is still there nonetheless, and that's why we should not fall for Randy Olson's false information and his stereotype of ID-proponents.

    I hope Telic Thoughts readers will examine the facts for themselves and, I hope, reject such stereotypes against ID proponents.

  • June 12, 2007

    Evolution and Dissent: CSC Senior Fellow DeWolf in the Boston Globe

    This opinion piece by David K. DeWolf ran in the Boston Globe, yesterday.

    IT'S THE QUESTION that won't go away. Twice during the Republican presidential debates and once at a forum for Democratic candidates, candidates were asked about evolution. For example, in the California debate all the candidates were asked to respond to the question of whether they believed in evolution. In the New Hampshire debate, follow-up questions were asked of former Arkansas governor Mike Huckabee and Kansas Senator Sam Brownback. At the Sojourners Forum debate, John Edwards was asked, "Do you believe in evolution or do you believe in creationism?"
    As several commentators have pointed out, these are trick questions, because "evolution" was never defined. Do I believe that the Corvette has evolved over the years? Yes, I do. Do I think that it evolved by random mutation and natural selection? No, I don't.

    At the New Hampshire debate, Wolf Blitzer asked Arizona Senator John McCain a follow-up question: "Do you believe creationism should be taught alongside evolution in the nation's schools?" This too is a trick question, because no serious advocate wants to teach "creationism." However, there is increasing skepticism among thoughtful scientists of a central claim of neo-Darwinism, namely that complex living systems can be generated from mindless processes like random mutation and natural selection. Thus, the question that Wolf Blitzer should have asked would be along these lines: "Do you think that the topic of Darwinian evolution should be taught objectively in our public schools, with evidence for and against the theory?"

    Some candidates would undoubtedly answer "No," asserting that there "is no debate" over evolution and that teaching "both sides" of a non controversy does a disservice to students.
    But we have heard that rhetoric elsewhere. For example, Al Gore has famously said that the debate is over regarding global warming. Even assuming that human beings cause global warming, scientists vigorously debate how significant the human contribution is and how beneficial remedial measures would be. "The debate is over" really means, "My mind is made up. Don't confuse me with the facts."

    You might think that a public high school is a poor venue for controversies in science. But even in higher education political and ideological agendas are threatening academic freedom. For example, Guillermo Gonzalez, a talented astronomer at Iowa State University, was recently denied tenure. Gonzalez has published 68 scientific papers, more than three times the number normally expected for tenure in his department. His college textbook on astronomy was published by Cambridge University Press. His work has been featured in top scientific journals, including a cover story in Scientific American.

    But in 2004 Gonzalez co authored a book, "The Privileged Planet: How Our Place in the Cosmos is Designed for Discovery," which made the case for attributing the life-sustaining features of our planet to something other than random chance. This was too much for some colleagues at ISU. A petition was circulated by a religious studies professor and signed by 120 colleagues, affirming their rejection of "all attempts to represent intelligent design as a scientific endeavor."

    Some may have the illusion that science is devoid of politics. But whether we debate the efficacy of a pharmaceutical drug, the risks of electromagnetic radiation, or the potential benefit of embryonic stem cells, financial and ideological agendas are not easily set aside. As bad as political correctness may be in the humanities and social sciences, we should be particularly alarmed by a threat to the right to dissent from the "mainstream" when it comes to scientific knowledge, often a critical component of our public policy.

    Those with the courage to challenge reigning orthodoxies ought to be able to follow the scientific evidence where it leads. Some may study the scientific evidence for Darwinian evolution and conclude that there is no God. Some may study the evidence for intelligent design and conclude that atheism is irrational. Some may reach the conclusion that Darwinian evolution and religious faith are perfectly compatible. The question of how best to explain the appearance of design in the universe should be fair game; scientists, teachers, and students should have the right to reach the answer that each finds most satisfying.

    At the next presidential debate, I'd like to hear the following question: "Do you think public school students should be permitted to hear both sides of the debate about Darwinian evolution?" American voters want to know their answers.

    David K. DeWolf is a professor of law at Gonzaga Law School in Spokane, Wash., and a senior fellow at the Discovery Institute in Seattle .

    Would Dr. Arno Penzias, Nobel Laureate in Physics, Be Blacklisted at Iowa State?

    APenzias_full.jpg

    Guillermo Gonzalez is the outstanding astronomer who was blacklisted from tenure at Iowa State University because of his support for intelligent design. As my colleagues here on ENV have pointed out, Dr. Gonzalez’ academic record is superb. Since his arrival in 2001, Dr. Gonzalez has been the most productive astronomer in his department, judged by the impact factor of his publications.

    It’s clear that Dr. Gonzalez was denied tenure for only one reason: he stated publicly that he believes there is evidence for design in the universe. As I observed in a previous post about Georges Lemaître, the Catholic priest who is the father of the Big Bang theory, many of the most prominent astronomers in history have shared Dr. Gonzalez’s opinion about the evidence for design in the universe. Nowadays, it is very dangerous to state such beliefs in science departments of many universities, including Iowa State University.

    Who else, besides Dr. Gonzalez and Dr. Lemaître, would qualify for Iowa State’s blacklist? Nobel laureate Dr. Arno Penzias (photo) meets Iowa State’s implicit criteria for denial of tenure. He has discussed his opinions regarding the philosophical ramifications of his discovery quite openly, and, in many ways, has done so in a way that was more explicitly religious than Dr. Gonzalez.

    Penzias, along with his colleague Robert Wilson, worked at Bell Telephone Laboratories in Holmdel, New Jersey. In 1964, they detected diffuse isotropic radio noise of very low energy. After ruling out terrestrial sources, they realized that the noise was the cosmic microwave background radiation, a remnant of the Big Bang. They shared the 1978 Nobel Prize in Physics for their seminal discovery.

    Penzias stated to the New York Times on March 12, 1978:

    The best data we have [concerning the Big Bang] are exactly what I would have predicted, had I nothing to go on but the five books of Moses, the Psalms, the bible as a whole.
    In a subsequent radio interview, Penzias was asked what there was before the Big Bang:
    “We don’t know, but we can reasonably say that there was nothing.” An upset listener called immediately, accusing Penzias of being an atheist. He wisely replied: “Madame, I believe you are not aware of the consequences of what I just said. Before the Big Bang there was nothing of what now exists. Had there been something, the question could be: where did it come from?” He continued commenting that if there was nothing and suddenly things began to appear, that was sign that Somebody had taken them from nothing, and concluded saying that his discovery could bring about the overcoming of the historic enmity between science and religion.
    Dr. Penzias, like Dr. Gonzalez, thought deeply and has spoken quite publicly about the philosophical and theological implications of 20th century discoveries in astronomy. Fortunately for Penzias, his scientific accomplishments were evaluated by the Nobel Prize Committee, not the tenure committee at Iowa State University.

    June 11, 2007

    New Law Review Articles Discuss Teaching Evolution: Darwinist Law Professor Supports Censorship of ID Ideas

    In a recent law review article in Rutgers Journal of Law and Religion, Stephen A. Newman, law professor at New York Law School, provides a wonderful example of how prevalent among some academics is the idea that it is acceptable and appropriate to censor intelligent design ideas. Newman writes:

    Consider the experience of two librarians who received copies of two intelligent design books, Darwin’s Black Box by Michael Behe and Darwin on Trial by Philip Johnson, as donations to their high school collections. When the librarians refused to put the books on the school library shelves, they were accused of censorship. In fact, exercising their professional judgment, they concluded that these books had “little or no value to our students and come from those with ulterior motives.” The books did not meet the usual selection criteria, which required that books “support the curriculum, receive favorable reviews from professional journals, and be age-appropriate.” Noting that intelligent design theory had been “repudiated by every leading scientific organization, including the American Association for the Advancement of Sciences and the National Academy of Sciences,” the librarians determined that teaching intelligent design “would be tantamount to teaching about the existence of Santa Claus.”

    (Stephen A. Newman, “Evolution and the Holy Ghost of Scopes: Can Science Lose the Next Round,” 8.2 Rutgers Journal of Law and Religion (Spring, 2007), internal citations removed.)

    But are these AAAS and NAS statements legitimate authorities? Since the AAAS issued an unresearched press release against ID and the National Academy of Sciences (whose biologist membership, keep in mind, is ~95% atheists and agnostics) published a booklet (co-authored by Eugenie Scott, no less) against ID, these librarians apparently feel it's OK to censor ID not just from classrooms, but from libraries.

    In this present situation, we're not talking about making Darwin's Black Box or Darwin on Trial part of the required curriculum. We're simply talking about donating books to a library so students can have access to information about a controversial scientific and social issue over how life began. The censored books' authors are well-credentialed professors at top universities whose views are shared by other well-credentialed academics. Michael Behe's book was a New York Times bestseller and Phillip Johnson's book was debated by scholars such as Stephen Jay Gould and even deemed a view worthy of consideration by scientists like David Raup. There's no rational basis for banning these books from a library, other than plain and simple censorship of ideas you don't like.

    Newman praises the "professional judgment" (i.e. the imposing of a viewpoint via censorship) of the librarians and ironically, he quotes the case Board of Education v. Pico to support his view: "Students must have access to ideas, to prepare 'for active and effective participation in the pluralistic, often contentious society in which they will soon be adult members.'” (quoting Pico, pg. 868). Newman then asserts, "Undermining the teaching of evolution deprives them of access to the best ideas in science."

    But nobody in the ID-movement is advocating that any less evolution be taught than currently is taught. Evolution should be taught, but it should be taught with both its scientific strengths and it scientific weaknesses. This concept was well-captured by the Conference Report to the No Child Left Behind Act:

    [A] quality science education should prepare students to distinguish the data and testable theories of science from religious or philosophical claims that are made in the name of science. Where topics are taught that may generate controversy (such as biological evolution), the curriculum should help students to understand the full range of scientific views that exist, why such topics may generate controversy, and how scientific discoveries can profoundly affect society.
    Newman has turned academic freedom on its head: He is advocating censoring ideas that are non-evolutionary viewpoints. Newman hypocritically tries to cover his censorship by praising the pro-academic freedom language in the Pico ruling, stating that "[s]tudents must have access to ideas, to prepare 'for active and effective participation in the pluralistic, often contentious society in which they will soon be adult members.'" But does he practice what he preaches? Newman concludes his discussion by bemoaning "how often local librarians elsewhere yield to such pressure and quietly add these volumes to their school collections." It is a travesty that “pressure” is even necessary to merely add pro-ID books to a school library. But clearly Newman does not want pro-ID ideas in library books. Academics like Stephen Newman have mindsets that aren’t even in the same solar system as those who truly support the view that “[s]tudents must have access to ideas.”

    Res Ipsa Loquitor
    Keep in mind that Discovery Institute strongly supports teaching evolution and isn’t trying to remove any scientific viewpoint from the classroom. Who is really opposing “access to ideas” here? As Randy Olson says in Flock of Dodos, “Res Ipsa Loquitor” (Stephen Newman speaks for himself).

    The rest of Newman's article contains much water-cooler speculation about how the current makeup of the U.S. Supreme Court would respond to a lawsuit challenging the teaching of evolution. This section really doesn't interest me because it’s just a lot of speculation about how certain Justices on the Court might vote in certain hypothetical situations.

    More alarmingly, Newman ends his article by using unscholarly and pejorative terms to describe Christians. Newman ends his article by declaring a desire to "protect science teachers from involuntary enlistment into the ranks of proselytizers of the Christian faith." His incredible bias is shown in the fact that such language passes acceptability in a legal journal without any thought that it is intensively demeaning to the religious beliefs of millions of Americans.

    [Author's note: edited to remove a mistake regarding the case Board of Education v. Pico.]

    Would Galileo Side With John Hauptman or Guillermo Gonzalez?

    We’ve recently discussed Iowa State University physicist John Hauptman’s prejudice against ID-proponents which was printed in the Des Moines Register. In response to our article observing misrepresentations of Guillermo Gonzalez’s arguments, David Deming, geologist and geophysicist and associate professor at the University of Oklahoma, sent some enlightening comments that further respond to Hauptman’s op-ed against Guillermo Gonzalez. Part of Dr. Deming’s comments are reprinted below:

    It certainly must have been a profound embarrassment for the Iowa State president to issue a press release stating ID had nothing to do with the tenure decision on the same day that Hauptman published a confession that it was the essentially the only reason he voted against Gonzalez's tenure.

    I saw your most recent comments:

    > (In fact, Hauptman holds scientific theories to a very high standard,
    > writing, “Any single wrong prediction, and you must junk the theory.”

    Hauptman in fact is in way over his head. The philosopher who INVENTED the falsifiability criterion, Karl Popper, wrote: "In point of fact, no conclusive disproof of a theory can ever be produced." (Logic of Scientific Discovery, 1959, p. 50)

    Hauptman attempted to align himself with Galileo, but evidently was unaware that Galileo endorsed the Design Argument. In Letter to the Grand Duchess Christina (1615), Galileo wrote "nor is God less excellently revealed in Nature's actions than in the Bible".

    Hauptman is evidently also unaware that Galileo's contract at his first academic appointment, the University of Pisa, was not renewed (i.e., he wasn't tenured) because he fought with the Aristotelian professors on the faculty over how natural philosophy should be conducted. Galileo believed that natural philosophy or science should concentrate on efficient causes. The Aristotelians believed that final causes were more important, and thus were not particularly bothered by the failure to conform to experiment. Put in modern terms, Galileo wasn't tenured because he attempted to redefine science--exactly what Hauptman says Gonzalez must not be allowed to do.

    June 10, 2007

    Gonzalez Co-Author Says "Tenure Denial Springs From Ignorance of Design Theory and Scientific Hubris"

    The Des Moines Register has today published a letter by CSC Senior Fellow, Dr. Jay Richards, defending his and Dr. Guillermo Gonzalez's work in their book The Privileged Planet. Below you will find the complete text of Dr. Richard's letter.

    There were additional letters published today in support of Gonzalez following the president of Iowa State University's decision last week to uphold his denial of tenure. Two challenge Dr. John Hauptman's op-ed from last week. Amazingly, Hauptman admitted his complete disregard for academic freedom and said that he denied tenure to Gonzalez, who he said was "very creative, intelligent and knowledgeable, highly productive scientifically and an excellent teacher," because Gonzalez was a proponent of intelligent design. One letter pointed out:

    Coincidentally, on the same day that Hauptman's lengthy defense of his "no" vote appeared in the Register, another article in the paper noted that ISU president Gregory Geoffroy "said that, Gonzalez's advocacy of the 'intelligent design' concept was not a factor in the decision to turn down his request for tenure."

    Here's the text of Dr. Richards' letter: Tenure denial springs from ignorance of design theory and scientific hubris
    The June 2 Iowa View about the denial of tenure to astronomer Guillermo Gonzalez by Iowa State University physicist John Hauptman displays almost total ignorance of the argument that Gonzalez and I make in our book "The Privileged Planet" ("Rights Are Intact: Decision Rests on, 'What Is Science?'").

    For instance, after listing the conditions needed to build a habitable planet like Earth, Hauptman says, "Why are these conditions so 'perfect' for us, allowing humans to exist and, above all, to ask these questions? Intelligent design is the notion that a supreme being arranged it for us."

    No it's not. We never argue for design based on the rarity of habitable planets. In fact, we spend a great deal of time arguing that that's a bad argument. Rather, we argue that the overlap of conditions for life and for scientific discovery suggests design, because you would expect such an overlap if the universe were designed for discovery, but not otherwise. Hauptman doesn't even know our basic premise - which a number of prominent scientists have found persuasive - even though it's in the subtitle of the book ("How Our Place In the Cosmos Is Designed for Discovery").

    Hauptman then tells readers, "Intelligent design is not even a theory. It has not made its first prediction, nor suffered its first test by measurement. Its proponents can call it anything they like, but it is not science." But in the book, we make predictions and list ways our argument can be tested: Find native animal life in a radically different astronomical setting than ours, or based on chemistry other than carbon or in an environment hostile to scientific discovery, and you've falsified our argument. Find a place that is hostile to life but more congenial to science than the Earth, and our argument collapses. So, by Hauptman's own definition of science, "The Privileged Planet" qualifies.

    Hauptman was involved in denying tenure to Gonzalez. So we now know that decision was based not only on ill-informed prejudice against intelligent design, but on ignorance of Gonzalez's views. What does that say about the integrity of the tenure process at ISU?

    - Jay W. Richards,
    co-author, "The Privileged Planet: How Our Place in the Cosmos is Designed for Discovery,"
    East Grand Rapids, Mich.

    June 9, 2007

    Michael Behe Featured on Michael Medved

    Michael Behe was featured on the Michael Medved Show this week to talk about his new book, Edge of Evolution: The Search for the Limits of Darwinism, and the audio is now available here.

    Bringing up the way evolution has been popping up in the presidential debates, Michael Medved had the fortunate insight to note that this isn’t an issue about evolution per se. Behe was able to respond by clarifying the debate with the right question to ask: is life the result of purpose or an accident?

    Another question is provoked by the book's title: Where is the edge of evolution? Michael Behe explains that there exists a dividing line between randomness and design in life. Since Darwin first posited his theory, the arguments for the creative power of natural selection acting on random mutation have been unconstrained by data. Now we have the first large-scale studies which provide boundaries for evolution.

    Edge of Evolution promises to be as insightful and provocative as Behe’s Darwin’s Black Box, and now you have the chance to come meet Michael Behe at a special reception and discussion of Edge of Evolution. The book party will be held on Wednesday, June 13th from 5:30 to 7 p.m. at Discovery Institute's Washington DC office, located at 1015 Fifteenth Street, NW Suite 900. RSVP to Logan Gage at lgage@discovery.org, (202) 558-7085, and see here for more information.

    June 8, 2007

    Materialist Neuroscience and an Iron Spike through the Brain

    phineas.gif

    P.Z. Myers over at Pharyngula has responded to my recent post in which I criticized strict materialist explanations for the human mind. I have argued that the mind is not completely caused by the brain. By that, I mean that there are properties of the mind, such as ideas, that are not caused by brain matter alone. Brain matter cannot be the complete cause for ideas because matter and ideas share no properties. Cause and effect can’t be ‘linked’ between substances that have no properties in common. I pointed out that the materialist view that matter alone causes ideas is substantially the same as the view that ideas alone move matter, which is the pseudoscience of ‘telekinesis’.

    I believe that materialism is incapable of providing an adequate explanation for the mind. Clearly ideas can influence the movement of matter (via the brain), and vice-versa, but materialism alone is inadequate to explain the link. The link between the mind and the brain must involve agency that has such non-material properties as purpose and judgment, and, as such, an adequate explanation for the mind must necessarily be open to immaterial causes.

    Myers raised the example of Phineas Gage and I believe that the example of Gage is important. The issues raised by brain disease and injury cause real problems for the view that the human mind is entirely an emergent product of brain matter.

    Phineas Gage was a railway worker in the mid-19th century who suffered a severe brain injury when an explosion drove an iron spike through his brain (diagram above). He survived the injury, but his personality changed considerably. Prior to the injury, he was sober and hardworking. After the injury, he was profane and shiftless. The change in his personality was attributed to the injury to his frontal lobes, and the case stimulated much interest in the neurology of behavior and personality.

    The changes in Gage's personality from the brain injury raise serious problems for the materialist theories of the mind. Gage’s associates and family realized that his behavioral changes were ‘not him’, and his behavior was ‘not him’ in a way that diminished his personal responsibility for his actions. That, is, they realized that the brain injury left him with immoral judgment, not just different judgment. And the observation wasn’t just that his judgment was less effective or comported less with reality, but that it was morally wrong in ways that it had previously been morally right. They recognized, at the same time, that Gage was less culpable for his ideas and actions after the injury.

    Yet if the mind were just an emergent property of brain matter, Gage’s personality after the injury would have been just as much ‘him’ as his personality before the injury. If Gage’s mind were merely the product of brain matter, then Gage’s behavior before and after the accident were both the ‘real’ Gage. It was different behavior, of course, just as Gage had different brain matter, and perhaps behavior that was more or less effective at achieving certain goals, but equally culpable and equally real. A materialist has no basis for assigning either the pre-morbid or the post-morbid behavior to the ‘real’ Gage or assigning a moral status to either. Moral value isn't a property of mere configurations of matter. Matter can't be 'moral' or 'immoral'.

    Yet we all (even materialists!) intuitively recognize that there are differences in culpability, and thus in intent, in the presence of organic brain disease. When we are free of brain dysfunction, we are the ‘real’ us, and when we have brain dysfunction, we aren’t the ‘real’ us. If we suffer from serious brain disease, we may even be 'not in our right mind'. This forms the basis for the McNaughton Rule, which is the Western legal principle that criminal culpability is diminished if the individual has a brain disease that impairs his ability to distinguish right from wrong, or impairs his ability to act in accordance with that judgment. But organic brain disease is just ‘different brain matter’, and if the mind is entirely a secretion of the brain, then behavior arising from brain disease is just a different secretion, with no different moral status. Green bile is no more 'moral' than yellow bile. It will not avail to claim that organically 'healthy' brain tissue is what gives rise to virtue, and organically 'diseased' brain tissue is what gives rise to evil. A healthy genius may murder an elderly man with Alzheimer's disease who was offering to do his killer a favor; in this case, the virtuous idea arose in the diseased brain, and the evil idea arose in the healthy brain. The virtue or evil of an idea is not determined by the health or structure of the brain tissue associated with it.

    If one accepts the materialist paradigm, mental ‘secretions’ may differ in form, or effectiveness in perceiving reality, or effectiveness in acting, etc, but no mental ‘secretion’ is more morally culpable than another. Materialists implicitly assert that the McNaughton Rule is nonsense. If materialism is true, then there are no differences in moral culpability. None of us is in our ‘right mind’, we’re just in different minds at different times, depending on the contemporary condition of our brain matter.

    What Myers is arguing, perhaps without fully realizing it, is that all of humanity’s notions of moral value and culpability are nonsense, because he claims that mere configurations of matter are the entire cause of ideas and of personality. Values and culpability cannot be ascribed to matter itself, and values and culpability cannot be ascribed to ideas and personality if the mind is caused by matter alone.

    The problem of free will and culpability is devastating to a deterministic theory of the mind. In the very act of discussing the mind, we presume that our opinions aren't determined wholly by chemistry and physics. We think that our opinions are true, in a metaphysical way, and are not merely chemical reactions. By promoting materialism as true, strict materialists must implictly claim exemption from their own theory of the mind. If materialism is true, the idea of materialism is merely a particular configuration of neurochemistry and brain matter. Just as materialists attribute the changes in Phineas Gage’s behavior entirely to the material changes in Gage’s brain caused by the iron spike, the materialistic theory itself is then a consequence of changes in the materialists’ brain tissue— a sort of ideological iron spike. From the materialist perspective, when P.Z. Myers reads Dennett or Dawkins or Churchland, Myers’ new ideas are caused merely by electrochemical reactions to the photons reflected from the pages of the books that cause changes in Myers’ brain. Just as photons from books cause material changes in Myers’ brain which cause changes in Myers’ ideas, the iron spike from the railway explosion caused material changes in Gage’s brain which caused changes in Gage’s ideas. Materialist books and the electrochemical brain processes they give rise to are more nuanced than Gage’s iron spike, but, from the materialist perspective, they are qualitatively no different. They are both material causes of changes in brain matter and thus of changes in ideas. According to Myers’ strict materialist theory of the mind, books and iron spikes both cause their effects on the mind in the same way: by rearranging brain matter. Rearranged brain matter isn't 'true' or 'false'— it's just different. And the opinion that certain arrangements of brain matter give rise to true ideas is itself just a different arrangement of brain matter.

    If ideas are caused entirely by brain tissue, Myers has no more claim to truth after reading books about materialism than Gage had a claim to truth after his brain was punctured by a spike. All opinions are just reshuffled brain matter— including the idea that opinions are just reshuffled brain matter! As philosopher John Searle notes "...the conviction of our own freedom is inescapable. We cannot act except under the presupposition of freedom." (1) The materialist theory of the mind, as a deterministic theory that maps our thoughts entirely to our neurochemistry and to our brain matter, reduces to nonsense.

    The materialistic/deterministic understanding of the mind is self-refuting, and is inconsistent with our intuitive and nearly universal understanding of personality and of moral culpability. But I wish that I could say that Myers wasn’t entirely wrong. I like the analogy between materialist ideology and an iron spike through the brain…


    (1) Searle, John R.: Mind. A Brief Introduction. In Fundamentals of Philosophy Series Oxford University Press 2004 p 164

    June 7, 2007

    Montana Law Review Features Exchange over Kitzmiller Intelligent Design Decision

    mlrcover3.JPGThe current issue of the Montana Law Review features a lively exchange of views about the Kitzmiller v. Dover intelligent design decision, and the articles are now available online at the law review’s website. The lead article on the Dover decision (“Intelligent Design Will Survive Kitzmiller v. Dover) is co-authored by David DeWolf, me, and Casey Luskin. A second article by Peter Irons (“Disaster in Dover”) responds to our article, followed by a short rebuttal by DeWolf, me, and Luskin. There is also an editors’ introduction with a timeline of the Dover case (currently not available online).

    Although we recommended to the law review that Prof. Irons be invited to write the second article, I must admit that his piece was a bit of a disappointment. Readers seeking a serious defense of Judge Jones’ ruling will have to look elsewhere. There is very little about either constitutional law or the substance of the intellectual debate over design in Irons’ article. Instead, his piece reads like a cribbed version of Barbara Forrest’s overwrought Creationism’s Trojan Horse, seeking to refute the constitutionality of teaching about intelligent design primarily by demonizing its supporters. I’m sure Irons’ piece will win plaudits among Darwinists who have touted federal judge John Jones as “an outstanding thinker” and “[s]omeone who... is as deserving of the title ‘great thinker’ as someone who writes a great mathematical proof or a great work of music criticism.” But I doubt his article will be persuasive to those who aren’t already part of the Darwinist Amen chorus.

    The fact is, the Kitzmiller decision isn’t wearing well even among legal scholars who are critical of intelligent design. For example, Boston University Law School Professor Jay Wexler supports the result of the Dover ruling but says, “The part of Kitzmiller that finds ID not to be science is unnecessary, unconvincing, not particularly suited to the judicial role, and even perhaps dangerous both to science and to freedom of religion.” (emphasis added)

    Similarly, distinguished legal scholar Arnold H. Loewy, currently the George R. Killam Jr. Chair of Criminal Law at Texas Tech Law School, writes:

    [I]nvalidating the teaching of intelligent design in public schools is flatly inconsistent with free speech principles… If the Supreme Court ever gets a case, unlike Kitzmiller, where the School Board of Legislature’s apparent motive for integrating intelligent design into the curriculum is to maximize student exposure to different ideas about the origin of the species, and not to indoctrinate religion, the Court should uphold the provision.”—Arnold H. Loewy, “The Wisdom and Constitutionality of Teaching Intelligent Design in Public Schools,” 5 First Amend. Law Review, 89, emph. added.

    Given that there has been a lot of inaccurate information circulated about the Dover case, I hope our article dispels some of the common myths and clarifies the important constitutional questions at stake. Regardless, this exchange of articles is a good place to start for those interested in a deeper understanding of the issues involved.

    Does The Panda’s Black Box “mov[e] beyond mere name-calling and finger-pointing” or continue the Darwinian trend?

    Does Panda's Black Box really contribute something new or is it just more Darwinist "name-calling and fingerpointing"?
    A book has come out about intelligent design, published by Johns Hopkins University Press and titled The Panda’s Black Box, that promises on its dust-jacket that it “moves beyond mere name-calling and fingerpointing.” Does it live up to its promise? Let’s look at some of the statements in the book to find out. We’ll start with my favorite quote, by bioethicist Jane Maienschein: “There is no doubt, there is no evidence against evolution, and there is no controversy about the science of evolution.” Just keep repeating that to yourself over and over again until you believe it. Other examples include Scott F. Gilbert's proclamation that "I see Intelligent Design to be in the tradition of American flimflam artistry" or the instance where he calls Jonathan Wells, "The Reverend Jonathan Wells." "[F]limflam artistry?" That sure sounds like namecalling to me. And of course Jonathan Wells has never been a “Reverend,” but rather holds 2 Ph.D.’s from top institutions: a Ph.D. in molecular and cell biology from UC Berkeley and a Ph.D. in theology from Yale. Gilbert mentions none of Wells’ academic credentials (nor does Ken Miller, when using the same tactic), and instead prefers a namecalling strategy most common among Darwinist namecalling bloggers. But apparently in the Darwinist academic community, such tactics are also acceptable in books published by Johns Hopkins University Press. All I can conclude is that this book has aptly chosen to put the word "Panda's" in its title. What follows is a survey of various similar statements made in this academic book that promises to "mov[e] beyond mere name-calling and fingerpointing":

    The statements can be classified into 4 categories:

  • Category 1: Name-Calling
  • Category 2: Fingerpointing
  • Category 3: Patently False Rhetoric
  • Category 4: Mistakes and Other Erroneous Claims.

    The table below surveys some comments from various chapters in The Panda's Black Box (by no means exhaustively) that fit into one or more of these 4 categories:

    AuthorQuotePage #Category and Comments
    Nathaniel C. Comfort"among biologists, there is no controversy over Intelligent Design … Biologists—whether atheist, animist, Muslim, Hindu, Christian, or Jewish—simply do not take Intelligent Design seriously as an evolutionary mechanism."1Category 3: There are a good number of biologists who support intelligent design, and this is patently false rhetoric.
    Nathaniel C. Comfort"the biological worldview [including evolutionary biology] is so well supported by evidence, so coherent theoretically, so compelling to anyone not dogmatically mystical, that many of those insulated by ivy-covered laboratory walls find it inconceivable that anyone would challenge it."1-2, emphasis addedCategories 1, 2, & 3: In reality, there are hundreds of credentialed scientific dissenters from Darwinian evolution.
    Nathaniel C. Comfort"when the scientific community dismisses the challengers as either ignorant or stupid, the public—many of whom accept science’s authority in matters of nature but not of morals—tends to see the disingenuous design proponents as paragons of intellectual honesty and integrity."2Categories 1 & 2: He’s clearly calling design proponents “disingenuous” as a generalized stereotype.
    Nathaniel C. Comfort "David Limbaugh, another Discovery Institute fellow…"4Category 4: This statement is completely false: David Limbaugh is not and has never been a Discovery Institute fellow.
    Nathaniel C. Comfort"Michael Behe is the only practicing bench scientist among the movement’s leaders"5Categories 2/3/4: Many ID proponents to laboratory research, and another prime example is Discovery Institute’s senior fellow Scott Minnich, a microbiologist at the University of Idaho who testified alongside Behe at the Dover trial.
    Nathaniel C. Comfort"The design proponents count as peer-reviewed anything that was read by another design proponent, whether or not the review process was open to critics of ID, whether or not the peers rejected the article, or where it was published."5Categories 3/4: The statement is false; it refers to our peer-review page which plainly lists a number of peer-reviewed articles published in mainstream scientific articles that went through their normal review process.
    Scott F. Gilbert"Intelligent Design celebrates ignorance"47Categories 1, 2, 3: ID postulates an intelligent cause based upon our knowledge of the cause and effect relationship of the world, namely that high levels of specified and complex information come only from intelligence.
    Scott F. Gilbert"Behe is not the only Intelligent Design ‘scientist’ who ignores or distorts scientific evidence."45Category 1, 2, 3: This is blatant name-calling and fingerpointing, and by putting the word “scientist” in quotes, it also engages in false rhetoric against Behe’s status as a tenured research biochemist.
    Scott F. Gilbert"There is no science in Intelligent Design. … There is no substance to Intelligent Design."44Category 3: This is mere rhetoric against ID—a main aspect of ID’s scientific substance is that it can detect whether an intelligent cause was involved in the origin of a natural object by finding the tell-tale sign of intelligent action: high levels of specified complexity.
    Scott F. Gilbert"The Reverend Jonathan Wells"45Categories 1, 3, & 4: This name-calling implies that Wells is a “Reverend” (which he isn’t), when in reality Wells holds 2 Ph.D.’s from top institutions: a Ph.D. in molecular and cell biology from UC Berkeley and a Ph.D. in theology from Yale. Gilbert mentions none of Wells’ academic credentials.
    Scott F. Gilbert"I see Intelligent Design to be in the tradition of American flimflam artistry…"47Category 1: This is clear name-calling.
    Scott F. Gilbert"Ignorance of the natural world is dangerous; Intelligent Design proponents advocate this pernicious condition."49Categories 2 & 3: He states this after citing a quoted passage from Judge Jones with many mistakes, but this fingerpointing scare tactic is typical Darwinist rhetoric.
    Scott F. Gilbert"the Orwellian-named ‘Discovery Institute’"51Category 1: Clear name-calling.
    Scott F. Gilbert"the chicanery of the type perpetrated by Intelligent Design proponents can only work if there is a public desperate for their message."60Categories 1 & 2: This is clear name-calling and fingerpointing.
    Scott F. Gilbert”Intelligent Design is more in the tradition of American hokum than it is in any tradition of Western philosophy or theology."62Categories 1 & 2: This is clear name-calling and fingerpointing.
    Jane Maienschein"ID proponents, like their ‘creation science’ predecessors, create confusion about what is really meant by science and by religion and then take excellent advantage of the resulting confusion."84Category 2: She’s pointing fingers at ID proponents for allegedly creating “confusion.”
    Jane Maienschien"There is no doubt, there is no evidence against evolution, and there is no controversy about the science of evolution." 87Category 3: This is simple false rhetoric—falsified by the fact that over 700 doctoral scientists dissent from Darwinian evolution.
    Jane Maienschien"There is no controversy, Jones concluded. Or rather there is no controversy within science. There is no controversy that belongs in public education….Judge Jones’s wise and well-grounded ruling is extremely important."105-106Category 3: By praising Judge Jones’s ruling, she adopts as her own the false rhetoric with which she describes the ruling.
    Jane Maienschien"Therefore, we need understanding of evolution. We need the science, and also there is room to allow some versions of religion. Not the narrow, evangelical, science-bashing religion, but open-minded, tolerant, and well-behaved religion."108Categories 1, 2, & 3: It’s difficult to not laugh when reading a quote like this that lauds the “tolerant” and “open-minded” while stating that we should only “allow some versions of religion”—this also engages in clear name-calling and fingerpointing at a particular religious denomination of Christianity.
    Robert Maxwell Young"Intelligent Design: A Symptom of Metaphysical Malaise"109Categories 2: The title itself engages in fingerpointing.

    There are more statements that aren't represented here—there are so many misrepresentations of ID arguments and positions in this book that most of it just isn’t even worth critiquing.

    But what about truth in advertizing? Is the dust-jacket correct when it claims that this book “moves beyond mere name-calling and fingerpointing,” or is this just the same old Darwinian name-calling, with a few new voices added to the choir? Readers can decide for themselves.

  • June 6, 2007

    New Textbook Seeks to Improve Teaching of Evolution by Promoting Inquiry-Based Approach

    Explore Evolution: The Arguments For and Against Neo-Darwinism (Hill House Publishers Ltd., Melbourne and London, 2007) is the first biology textbook to present the scientific evidence both for and against key aspects of Darwinian evolution.

    EE_Cover%28sm%29.jpg“Sadly, the majority of biology textbooks in use today are ‘dumbed-down’ and do a poor job explaining evolution,” said Dr. John West of Discovery Institute, the book’s United States distributor. “Explore Evolution will improve the teaching of evolution by providing teachers and students with more information about evolution than they are likely to find in any other textbook written at the same level.” West is Associate Director of the Institute’s Center for Science and Culture.

    Explore Evolution promotes inquiry-based learning, encouraging students to participate in the process of discovery, deliberation, and argument that scientists use to form their theories.

    Explore Evolution brings to the classroom data and debates that already are raised regularly by scientists in their science journals,” emphasized science education policy analyst Casey Luskin, M.S., J.D. “Exposure to these real-world scientific debates will make the study of evolution more interesting to students, and it will train them to be better scientists by encouraging them to actually practice the kind of critical thinking and analysis that forms the heart of science.”

    Co-authored by two state university biology professors, two philosophers of science, and a science curriculum writer, Explore Evolution was peer-reviewed by biology faculty at both state and private universities, teachers with experience in both AP and pre-AP life science courses, and doctoral scientists working for industry and government. The textbook has been pilot-tested in classes at both the secondary school and college levels.

    The textbook looks at five areas of biology that are typically viewed as confirming the modern theory of evolution: fossil succession, anatomical homology, embryology, natural selection, and natural selection and mutation. For each area of study, Explore Evolution explains the evidence and arguments used to support Darwin’s theory and then examines the evidence and arguments that lead some scientists to question the adequacy of Darwinian explanations. Each chapter concludes with a section called Further Debate that explores the current state of the discussion.

    Explore Evolution is ideally suited for:

    • AP Biology teachers who need a stimulating capstone unit for the last 5-6 weeks of their AP course after their students have taken the AP biology test.
    • High School General Biology teachers who wish to deepen their own understanding of the strengths and weaknesses of modern evolutionary theory and want to incorporate inquiry-based learning into their teaching of evolution.
    • College-level biology instructors who teach freshman or honors General Biology courses or stand-alone courses on evolution.
    • Home school teachers who want to provide their students with a rigorous college-preparatory curriculum in the life sciences that stresses critical thinking skills.
    • Parents who desire to supplement and enrich their children’s school instruction in biological evolution in preparation for college.
    • Interested adults who wish to inform themselves about the scientific debates over key aspects of modern evolutionary theory.
    For more information, visit the textbook website at www.exploreevolution.com, where you will find the introduction to the textbook, table of contents, author and publisher information, as well as sample pages from the book.

    About the Publisher
    Established in 1982, Hill House Publishers Pty. Ltd. (Melbourne and London) specializes in publishing science and nature books of exceptional quality. In addition to Explore Evolution, its books include The Concise Atlas of Butterflies of the World (2001), The Birds of Asia, vol. 7 (1992), The Mammals of Australia, vol 2 (2002), and World Butterflies (2006). A publishing partner of the Natural History Museum in London, Hill House has been awarded an exclusive license by the museum to produce authentic facsimiles of priceless and rare antiquarian books, prints and maps from the world-famous libraries of that institution. For more information about Hill House Publishers, visit www.worldbutterflies.co.uk/.


    June 5, 2007

    Lessons Learned from Haeckel and His Drawings: We Shouldn't Always Believe What the "Leading Experts" Tell Us about Evolution


    Links of Interest:
  • Hoax of Dodos, a response to inaccuracies in Flock of Dodos
  • Haeckel's Bogus Embryo Drawings (Clip on YouTube)
  • The late Stephen Jay Gould was one of the most prominent and enthusiastic cheerleaders of biological evolution during the later decades of the Twentieth Century. As a Harvard professor who published many scholarly articles and books and taught biology, geology and the history of science, Gould was often viewed as a spokesperson for science and one of the most prestigious scientists in the world. As a frequent essayist in the popular press, Gould was also well known to the general public.

    To the consternation of fellow Darwinists, Gould often told the truth about Darwin's theory of natural selection and how it measured up against the real world. In 2000, he published an article, entitled "Abscheulich (Atrocious!): Haeckel's distortions did not help Darwin" (Natural History, March, 2000), that gave a frank assessment of Ernst Haeckel's infamous embryo drawings and the ethics of using them to sell Darwin's theory to students and the public.

    Gould described Haeckel as the "primary enthusiast and popularizer" of Darwin's theory of evolution in the late Nineteenth Century, "exert[ing] more influence than the works of any other scientist, including Darwin and [T. H.] Huxley." (Emphasis added.) Gould also admitted that Haeckel built his successful promotion of Darwin's theory in part on the fraudulent claims made in Haeckel's embryo drawings. Gould's assessment of Haeckel and his motives? Guilty: "Haeckel had exaggerated the similarities [in early embryos] by idealizations and omissions. He also, in some cases --in a procedure that can only be called fraudulent-- simply copied the same figure over and over again." (Emphasis added.)

    Gould added that Haeckel's drawings were known to be fraudulent by Haeckel's scientific peers from the outset. Given the prominence of Haeckel and his books, a corollary would be that Haeckel's scientific peers also knew from the outset that fraudulent drawings and claims were being used to sell Darwin's theory of evolution to the general public.

    Gould offered a frank assessment of the vice in using such fraudulent drawings in scientific propaganda aimed at the general public. He wrote, "'Improved' illustrations masquerading as accurate drawings spell much trouble in popular books intended for general audiences lacking the expertise to separate a misleading idealization from a genuine signal from nature."

    Hmm. If using such fraudulent illustrations in a popular book intended for adults "spells much trouble," how much more trouble would result from using such fraudulent illustrations in biology textbooks aimed at impressionable youth in public schools? Gould offered a frank assessment of that vice as well: "The smallest compromise in dumbing down by inaccuracy destroys integrity and places an author upon a slippery slope of no return."

    Yet, in 2000, when Gould wrote his article, Gould noted with disapproval that Haeckel's drawings were still widely used in high school and biology textbooks. Gould provided a weak excuse for the textbook writers who were still including Haeckel's fake embryo drawings in high school and college biology textbooks 100 years after they were known to be fraudulent. He claimed that the textbook authors were "probably quite unaware of their noted inaccuracies and outright falsifications" given Haeckel's reputation as one of the most highly regarded scientists of his era.

    Perhaps Gould is correct and textbook authors who used Haeckel’s drawings, like Brown University biologist Ken Miller or National Academy of Sciences president Bruce Alberts, simply did not previously know that Haeckel's embryo drawings were fraudulent when they included the drawings in their textbooks in publication at that time. Assuming such textbook authors were indeed innocent of purposely deceiving students, we are still left with a troubling implication: these textbook authors were not familiar enough with the subject matter of their textbooks to realize that Haeckel’s drawings were fraudulent. One is justified in asking, “How much informed, critical thinking is really going into textbook writing when it comes to evolution?

    Gould, of course, was no friend to critics of evolutionary theory. In his article, Gould made a feeble attempt to claim that the fuss over the continued use of Haeckel's drawings 100 years after they were known to be forged was much to do about nothing in terms of the legitimacy of Darwin's claims. But Gould, himself one of evolution's most prominent proponents, had nonetheless exposed an undeniable and incredibly revealing historical fact: In 2000, many proponents of Darwin's theory were using the same known fraudulent drawings and claims to sell evolution to school children that Darwin's leading proponent had used to sell Darwin's theory to the general public in 1900.

    Nascent filmmaker Randy Olson has recently put Haeckel's embryo drawings back in the spotlight again by making the false claim in his documentary, "Flock of Dodos," that Haeckel's embryo drawings weren't in fact included in any modern textbooks. When challenged on his claim by Casey Luskin and others, Olson has retreated to the equally false claim that Haeckel's embryo drawings were only included in modern textbooks for the purpose of putting scientific beliefs about Darwin's theory in historical context, but purportedly were never presented to students as accurate portrayals of nature.

    So who's the public to believe on the question of whether Haeckel's embryo drawings were indeed used widely in biology textbooks until rather recently, and the related question of whether Haeckel's drawings were presented in the textbooks as evidence of Darwin's theory of evolution? The renowned scientist Stephen Jay Gould, who admitted that the answer to both questions was "yes" and condemned the practice, or current Darwinist propagandist Olson, who seeks to deal with this inconvenient fact of the history of Darwinism by seeking to re-write it out of history?

    Personally, I have to go with Stephen Jay Gould and Jonathan Wells on this one.

    Guillermo Gonzalez, Nobel Laureates and Founders of Modern Science See Purpose as Best Explanation for Fine-Tuned Cosmic Habitat

    In a weekend essay in the Des Moines Register, Iowa State Physics Professor John Hauptman explains that ISU astronomer Guillermo Gonzalez was denied tenure because Gonzalez argued that a purposive cause is the best explanation for certain features of our cosmic habitat. By this standard, Hauptman will also need to fire many of the most esteemed physicists and astronomers of our day, as well as the founders of modern science. Hauptman and his fellow thought police at Iowa State have their summer work cut out for them.

    Hauptman equates Gonzalez's design inference with the ancient pagan habit of attributing every mysterious natural phenomenon to the direct activity of some god, concluding that Gonzalez was denied tenure because the astronomer failed to understand that scientists aren't allowed to draw such conclusions. Thus, Hauptman and his colleagues essentially fired Gonzalez for articulating an impermissible thought. And never mind that ISU tacitly endorsed Gonzalez's work on The Privileged Planet by administering his Templeton grant for the book project while he was writing it. And never mind that the Templeton proposal was persuasive enough to convince prominent researchers to select it for funding, including Max Tegmark, John Barrow, and atheists Peter Atkins and Michael Ruse. And never mind that several other prominent scientists endorsed or favorably reviewed the book, including Cambridge's Simon Conway Morris, Harvard's Owen Gingerich, and a vice president of the Royal Astronomical Society, David Hughes.

    Hauptman's op-ed invokes Galileo against Gonzalez, but Galileo stands with Gonzalez. The great 17th century astronomer insisted that "the great book ... the universe ... is written in the mathematical language," and that the author of that book was God. Another founder of modern science, Johannes Kepler, said that in discovering his three mathematically elegant laws of planetary motion, he was simply “thinking God’s thoughts after Him.”

    If Hauptman had read Gonzalez's book, The Privileged Planet, or even watched the one hour documentary based on the book, he would have some idea that the founders of modern science believed nature was discernible to rational inquiry precisely because they were convinced it was the work of a rational mind. As Privileged Planet co-author Jay W. Richards comments in the film,

    The founders of modern science like Copernicus and Kepler and Galileo and Newton himself believed that the universe was the product of a mind--that it was intelligible to beings like ourselves because the universe itself was the product of an intelligent being.

    Renowned theoretical physicist Paul Davies, who is neither a Christian nor a traditional theist, offers a similar assessment in the documentary:
    They were driven by this notion that this was, essentially, a theological quest. They were uncovering God’s handiwork in the way the world works. I mean, what a thought--we can glimpse the mind of God. We can figure out how God put the universe together. So there is a hidden subtext in nature which can be exposed through this procedure we call, "science."

    Nor did this approach fade after the founders of modern science. Many world renowned contemporary scientists from various points on the spectrum of belief, including George Ellis, Owen Gingerich, John Polkinghorne, John Barrow, Frank Tipler, Allen Sandage, Paul Davies, and Nobel Laureates George Smoot and Arno Penzias have pointed to a creative intelligence as the most reasonable explanation for things like the Big Bang and the fine tuning of the laws and constants of physics.

    I list a few of the many quotations to this effect here. And here is another by Berkeley physicist and recent Nobel Laureate Charles Townes:
    Intelligent design, as one sees it from a scientific point of view, seems to be quite real. This is a very special universe: it's remarkable that it came out just this way. If the laws of physics weren't just the way they are, we couldn't be here at all. The sun couldn't be there, the laws of gravity and nuclear laws and magnetic theory, quantum mechanics, and so on have to be just the way they are for us to be here.

    Some scientists argue that "well, there's an enormous number of universes and each one is a little different. This one just happened to turn out right." Well, that's a postulate, and it's a pretty fantastic postulate — it assumes there really are an enormous number of universes and that the laws could be different for each of them. The other possibility is that ours was planned, and that's why it has come out so specially.

    As Hauptman makes clear, and as two other ISU professors confirmed in comments to World magazine, Gonzalez was denied tenure because he made a case for the second option. Even Hauptman's insinuation that Gonzalez misunderstood the importance of testability fails since Gonzalez and Richards went to considerable lengths to show how the Privileged Planet argument could be empirically tested and falsified. And in the same essay where Hauptman explains why Gonzalez was denied tenure, Hauptman concedes that Gonzalez is "very creative, intelligent and knowledgeable, highly productive scientifically and an excellent teacher." Indeed, Gonzalez exceeded the university's peer-reviewed publication standards by 350% and led his entire department in a key indicator of professional scientific success, his normalized citation count. Gonzalez's citation count during his time at ISU is the highest in his department during this period.

    The question now becomes, how many people, scientists and non-scientists alike, will sit idly by while Gonzalez's academic and intellectual freedom is denied by a taxpayer funded public university. Hauptman offers lip service to the value of academic and intellectual freedom but then justifies the tenure denial by concluding that "a physics department is not obligated to support notions that do not even begin to meet scientific standards." Whose standards? Certainly not the standards of the founders of modern science.

    Is Hauptman's complaint that Gonzalez neglected experimental science that focuses on material causes? No. Both Hauptman's praise and Gonzalez's record demonstrate that Gonzalez led his department in this kind of work. Indeed, Gonzalez never even introduced his Privileged Planet hypothesis into the classroom. Is it that no reputable scientists in physics and astronomy see a purposive cause as a reasonable and even compelling explanation for things like the fine tuning of the laws and constants of physics? No. As we saw, the list of scientists who see evidence for purpose at the cosmic level reads like a who's who of theoretical physics and astronomy.

    What is at stake is intellectual and academic freedom, twin values at the heart of the scientific enterprise. Townes makes this point emphatically: "We should explore as much as we can. We should think about everything, try to explore everything, and question things. That's part of our human characteristic in nature that has made us so great and able to achieve so much."

    June 4, 2007

    ISU Physicist Misrepresents Guillermo Gonzalez’s Arguments for Testing Intelligent Design

    The Privileged Planet argues for design based upon a testable prediction of a convergence of the requirements for both habitability and scientific discovery.
    Rob Crowther recently discussed the intolerance of ISU physicist John Hauptman’s Des Moines Register op-ed that supported ousting ID-proponents from the academy.  Hauptman is a member of Guillermo Gonzalez’s department at ISU who voted against Dr. Gonzalez because Gonzalez believes ID is science.  Hauptman justifies his intolerance by claiming that “Intelligent design is not even a theory. It has not made its first prediction, nor suffered its first test by measurement.”  (In fact, Hauptman holds scientific theories to a very high standard, writing, “Any single wrong prediction, and you must junk the theory.” If that's the case, how can Hauptman support Neo-Darwinism without adopting a double standard?)  While Hauptman should be commended because he's one of the few to honestly admit that his intolerance against ID weighed heavily in his vote to deny tenure to Guillermo Gonzalez, Hauptman's op-ed fails to accurately represent or rebut Dr. Gonzalez’s arguments for intelligent design in The Privileged Planet.

    First, Hauptman's op-ed makes it clear that he thinks Dr. Gonzalez argues for design based upon mere coincidences that make our universe habitable.  But in reality, Dr. Gonzalez’s entire thesis argues for design based upon a convergence of the requirements for both habitability and scientific discovery.  Habitability is but one of two necessary components to the argument, and Hauptman either ignores, or fails to understand, the scientific discovery aspect of Dr. Gonzalez’s work.
     
    Second, Dr. Gonzalez has long maintained that his arguments for design make predictions and are falsifiable.  For example, in "An Open Letter to My Open-Minded Colleagues," Dr. Gonzalez writes, “The universe is designed not only for life but also for scientific discovery. The argument is falsifiable, vulnerable to the river of data about extrasolar planets, our galaxy, and the larger universe flowing in over the next two decades thanks to missions like Gaia and Kepler.” In fact, in 2004 I personally gave a presentation entitled “Paleomagnetism and the Privileged Planet,” discussing some data that I felt falsified part of The Privileged Planet hypothesis.  Gonzalez and Jay Richards responded to the evidence I raised which seemed to counter their hypothesis, illustrating the vitality of this young hypothesis.

    Clearly the privileged planet hypothesis makes testable predictions. It may take much data to completely determine if the hypothesis stands the test of time, but Dr. Gonzalez’s viewpoint is testable and falsifiable.  But since the first point above revealed that Hauptman doesn’t even accurately understand or represent what Dr. Gonzalez is arguing, how could we expect Hauptman to understand how to test those arguments?

    Finally, Hauptman brings out the old canard that adopting intelligent design will return us to thinking like pre-scientific Greeks, pejoratively writing, “The Greeks thought in a similar way. … There was love and war and lightning, and a god for each: Aphrodite, Ares and Zeus. We are past this way of thinking about nature.”  But in fact, in his Open Letter to My Open-Minded Colleagues, Gonzalez does not root his arguments in Greek myths, but rather explains that “Though controversial, the book [The Privileged Planet] has received positive endorsement or reviews from such leading scientists as Cambridge’s Simon Conway Morris, Harvard’s Owen Gingerich, and David Hughes, a Vice-President of the Royal Astronomical Society.”  Clearly Dr. Gonzalez’s work cannot seriously simply be dismissed as a hypothesis that returns us to the Greek mythology.  But perhaps Dr. Gonzalez’s Letter to My Open-Minded Colleagues wasn’t meant for John Hauptman.

    June 3, 2007

    ‘Waiter, My Steak Isn’t Altruistic Enough!’

    Is altruism merely a matter of brain physiology- just the happy result of eons of evolution? Is the brain—an elegant piece of meat— the sufficient cause of the mind and of the ideas that the mind generates? Does the brain secrete altruism, just like the liver secretes bile?

    Many neuroscientists believe that it does. In a recent Washington Post article entitled If It Feels Good to Be Good, It Might Be Only Natural, reporter Shankar Vedantam reveals some recent scientific studies of the relationship between the brain and altruism. Vedantam writes:

    …neuroscience has begun to elbow its way into discussions about morality and has opened up a new window on what it means to be good.

    He notes:

    Joshua Green, a Harvard neuroscientist and philosopher, said multiple experiments suggest that morality arises from basic brain activities. Morality, he said, is not a brain function elevated above our baser impulses. Greene said it is not “handed down” by philosophers and clergy, but “handed up”, an outgrowth of the brain’s basic propensities.

    Vedantam asserts:

    The [experimental] results- many of them published just in recent months- are showing, unexpectedly, that many aspects of morality appear to be hardwired in the brain, most likely the result of evolutionary processes that began in other species.

    The mainstream view among neuroscientists is that the mind, and such things as morality and altruism, are ‘emergent’ properties of the brain, caused entirely by neurons and chemistry. They believe that the brain is a sufficient cause for the mind, and they see human morality as a trait crafted by evolution. I think this view is wrong.

    For one process to cause another there must be a point of contact, in the sense that the processes linked in cause and effect must share properties in common. In biology, the liver contains molecules of enzymes and bilirubin and cholesterol, which cause the secretion of molecules of bile. In physics, a moving billiard ball collides with another billiard ball, causing each to change course. Each billiard ball starts with momentum, and momentum is exchanged when they collide. The transfer of momentum mediates the cause and effect. “Cause and effect’ presupposes commonality of at least one property- enzymes or bilirubin or cholesterol or momentum. Without commonality, there is no link through which cause can give rise to effect.

    The brain is a material substance. It has location, dimensions, weight, temperature, and energy. It also has parts; it has a superior surface, a medial boundary, a left side and a right side. As such, it can interact with other things that have similar properties- things that have matter and parts and energy. A region of the brain can cause action potentials, or movements of the arm. Oxygen molecules, barbiturate molecules, electrons, or a hammer can, in turn, affect the brain.

    Altruism, in contrast, has no matter or energy. It has no ‘location’, no weight, no dimension, no temperature. It has no properties of matter. Altruism entails things like purpose and judgment, which aren’t material. Altruism has no parts, in the sense that there is a ‘left-side’ of altruism and a ‘right side’ of altruism. There are, of course, left sided and right sided parts of the brain, which may be associated with acts of altruism, but there is no ‘left’ or ‘right’ to altruism itself. Of course, objects (like human brains or bodies) that have location, weight, etc. can mediate or carry out altruistic acts, but the altruism itself doesn’t have a location. Altruism isn’t spatial. ‘My altruism is three inches from the edge of the table’ is a nonsensical statement.

    There is no shared property yet identified by science through which brain matter can cause mental acts like altruism. Material substances have mass and energy. Ideas have purpose and judgment. There is no commonality. The association between brain function and ideas is fascinating, and the association of ideas with regions of the brain is a proper object of scientific study. But where there is no commonality of properties, association cannot be causation. Ideas must be caused by substances that have properties common to ideas- such as purpose and judgment.

    Materialist neuroscientists confuse association with causation. This is the unhappy result of scientific materialism, which excludes immaterial causes. Yet many things in the world, including our ideas and even our theories about the world, are not matter or energy. Altruism is obviously something very real; many people’s lives depend on it. We don’t know exactly what it is, but we know, by its properties, what it’s not. It’s not material. It shares no properties in common with matter. It can’t be caused by a piece of the brain.

    The remarkable thing about materialistic neuroscience, as applied to the study of the mind-brain problem, is how unscientific it is. Scientific materialism as a method in science intrinsically requires that a material cause and its effect share properties that link the cause to the effect. Materialistic scientists rightfully scorn pseudoscience like telekinesis, yet the view that ideas are caused by brain matter is merely a mirror image of the claims made on behalf of telekinesis. We know that Uri Geller can't really bend a spoon just by thinking about it, because the thought 'I'm bending this spoon' and the spoon itself share no properties in common. They're not connected. But the disconnection between matter and thought works both ways. It makes no more sense to assert that matter alone 'moves' ideas than it makes sense to assert that ideas alone move matter.

    To evade this conundrum, materialist neuroscientists evoke ‘emergence’, which is a materialist way of asserting ‘It happens. Trust us’. Assigning the cause of ideas like altruism to ‘emergence’ from brain tissue is like assigning the cause of phone conversations to ‘emergence’ from the cellphone. It’s an evasion, not an explanation.

    Clearly the brain, as a material substance, causes movement of the body, which is also a material substance. The links are nerves and muscles. But there is no material link between our ideas and our brains, because ideas aren’t material. Substances that lack properties in common cannot cause mutual effects. ‘My altruism is three inches from the edge of the table’ is a nonsensical statement. ‘My brain caused my altruism’ is nonsensical as well. A satisfactory explanation of altruism intrinsically requires a method open to immaterial causes.

    June 2, 2007

    ISU Professor Mistakes Prejudice for Academic Freedom

    The Des Moines Register has published two differing views on ISU's denial of tenure to Guillermo Gonzalez.

    The first, by Discovery senior fellow David Klinghoffer, looks at the current state of academic freedom at ISU and finds few defenders left there.

    The second is by a colleague of Gonzalez's, professor John Hauptman, who admits that intelligent design was the reason he voted against giving Gonzalez tenure, yet somehow doesn't perceive that as a violation of Gonzalez's academic freedom.

    First he he writes that:

    The assistant professor, Guillermo Gonzalez, works in the ISU Physics and Astronomy Department in the area of astrobiology. He is very creative, intelligent and knowledgeable, highly productive scientifically and an excellent teacher.
    Hauptman goes on to say that he appreciates Gonzalez's ideas, and that students seem to like Gonzalez as well.

    Hauptman also seems to stand up for Gonzalez's academic freedom to research and write about intelligent design:

    An assistant professor at a university has every right to pursue whatever investigations he or she so chooses to investigate. There must be no bounds, no restrictions and no penalties for research of any kind.
    Ah, but there were penalties, namely being denied tenure. If Gonzalez is such an excellent teacher, and he has the freedom to pursue "whatever investigations he or she so chooses to investigate" why not vote to give him tenure?

    Hauptman voted no precisely because Gonzalez is an intelligent design proponent, contradicting his own principle that there should be no penalties for such views.

    Hauptman says this about ID:

    Intelligent design is not even a theory. It has not made its first prediction, nor suffered its first test by measurement. Its proponents can call it anything they like, but it is not science.
    And then goes on to conclude that:
    It is purely a question of what is science and what is not, and a physics department is not obligated to support notions that do not even begin to meet scientific standards.
    He is mistaken. Intelligent design has made predictions, and it is testable. In fact, Dr. Gonzalez's own book, The Privileged Planet, makes predictions and has an entire chapter rebutting common objections, including the bogus charge that their argument is untestable. In The Privileged Planet, Gonzalez and co-author Jay Richards describe how to falsify their design argument. They suggest that there is a correlation between the conditions needed for life and the conditions needed for diverse types of scientific discovery, and suggest that such a correlation, if true, points to intelligent design. They write:
    The most decisive way to falsify our argument as a whole would be to find a distant and very different environment, which, while quite hostile to life, nevertheless offers a superior platform for making as many diverse scientific discoveries as does our local environment. The opposite of this would have the same effect—finding an extremely habitable and inhabited place that was a lousy platform for observation.
    Less devastating but still relevant would be discoveries that contradict individual parts of our argument. Most such discoveries would also show that the conditions for habitability of complex life are much wider and more diverse than we claim. For instance, discovering intelligent life inside a gas giant with an opaque atmosphere, near an X-ray emitting star in the Galactic center, or on a planet without a dark night would do it serious damage. Or take a less extreme example. We suggested in Chapter 1 that conditions that produce perfect solar eclipses also contribute to the habitability of a planetary environment. Thus, if intelligent extraterrestrial beings exist, they probably enjoy good to perfect solar eclipses. However, if we find complex, intelligent, indigenous life on a planet without a largish natural satellite, this plank in our argument would collapse.

    Our argument presupposes that all complex life, at least in this universe, will almost certainly be based on carbon. Find a non-carbon based life form, and one of our presuppositions collapses. It’s clear that a number of discoveries would either directly or indirectly contradict our argument.

    Similarly, there are future discoveries that would count in favor of it. Virtually any discovery in astrobiology is likely to bear on our argument one way or the other. If we find still more strict conditions that are important for habitability, this will strengthen our case.

    Professor Hauptman needs to reconsider his positions both on intelligent design and on academic freedom. He can start by reading Klinghoffer's op-ed which opens with:
    Americans like to think of our university system as a haven for unimpeded truth-seeking, where tenured professors press the boundaries of knowledge, no holds barred. The picture is attractive but false when it comes to scholarly consideration of big questions such as: Is the universe meaningful?
    The main point is that Gonzalez's Privileged Planet argument is based on physical evidence, is testable, and relies on reason rather than appeals to religious authority. The crucial question is whether Gonzalez should have the academic freedom to posit a purposeful agent as the best explanation for certain features of the natural world, something that several prominent scientists have done.

    University President Denies Appeal in Tenure Case of Intelligent Design Astronomer at Iowa State University

    Ames, IA – Dr. Guillermo Gonzalez, co-author of The Privileged Planet and an advocate of the scientific theory of intelligent design, has lost his first appeal to overturn the decision to deny him tenure at Iowa State University (ISU).

    President Gregory L. Geoffroy announced the decision yesterday to deny Dr. Gonzalez's appeal, despite the fact that Dr. Gonzalez published 350% more peer-reviewed journal articles than is "ordinarily" supposed to show research excellence in his department.

    “It’s a sad day for science and free inquiry when tenure is denied to a scientist of Guillermo Gonzalez’s caliber,” said Dr. John G. West, associate director of Discovery Institute’s Center for Science & Culture, where Dr. Gonzalez is a senior fellow. “President Geoffroy has clearly demonstrated that academic freedom is not as important to Iowa State University as passing an ideological litmus test.”

    Faculty in Gonzalez’s department admitted to World magazine that his intelligent design work played a role in their decision to deny him tenure. Given Dr. Gonzalez’s level of achievement, many suspect that he is the latest victim of discrimination against proponents of intelligent design theory.

    According to the Smithsonian/NASA Astrophysics Data System (ADS), Dr. Gonzalez has the highest "normalized citation count" among astronomers in his department for his publications since 2001, the year he joined ISU's faculty. The normalized citation count is a standard measure of the scientific impact of a scientist's research in the scientific community. Dr. Gonzalez’s research has been featured in Science, Nature, and on the cover of Scientific American, and other professors in his department use a peer-reviewed astronomy textbook he co-authored, which was published by Cambridge University Press.

    Dr. Gonzalez has twenty days to decide whether to appeal President Geoffroy's decision to the Iowa State Board of Regents.

    ISU President Geoffroy and the Elephant in the Living Room

    The President of Iowa State University, Gregory Geoffroy, has issued a statement defending his denial of the tenure appeal of Dr. Guillermo Gonzalez. In the statement, Geoffroy claims that he concluded that Gonzalez “simply did not show the trajectory of excellence that we expect in a candidate seeking tenure in physics and astronomy.”

    Ah, yes, President Geoffroy has such high standards of excellence that only the most outstanding professors are allowed to achieve tenure at ISU.

    Geoffroy’s high standards must be why he approved 91% of the tenure applicants at ISU in 2007 (and why the tenure approval rate has gone up each year at ISU for the past five years).

    Geoffroy’s high standards are presumably also why he promoted to full professor this year Hector Avalos, the ISU faculty member who argues in his “scholarship” that the Bible is worse than Hitler’s Mein Kampf. Yes, according to President Geoffroy’s exalted standards, only the best and brightest are allowed to stay at ISU!

    But there’s more.

    Geoffroy adds that he based his decision on Dr. Gonzalez’s

    refereed publications, his level of success in attracting research funding and grants, the amount of telescope observing time he had been granted, the number of graduate students he had supervised, and most importantly, the overall evidence of future career promise in the field of astronomy.

    Let’s look at the three most important factors identified by Geoffroy:

    "Refereed publications." Refereed publications are supposed to be the primary standard for excellence in research according to Gonzalez’s own department’s tenure and promotion policies. So how did Gonzalez perform according to this primary criterion? He published 68 refereed articles in science journals350% more than the 15 articles his department regarded as the normal standard for demonstrating research excellence. Even if one only looks at articles published by Gonzalez after he arrived at ISU, he still produced 25 since 2002—which again is significantly more than the 15 articles that “ordinarily” are supposed to demonstrate research excellence according to his department’s standards. In addition, according to the Smithsonian/NASA Astrophysics Data System, Gonzalez has the highest number of “normalized citations” to his work among the astronomers in his department for articles published between 2001 and 2007. If President Geoffroy really considered Gonzalez’s refereed publications, the answer as to why Gonzalez deserved tenure should have been obvious.

    "Research funding and grants." Although Gonzalez has received enough funding to maintain a strong record of publications, he has not brought in big bucks to his university. So what? Research funding is not even listed as a standard in his own department’s tenure and promotion policies. It is also difficult to believe that the 91% of applicants approved for tenure this year at ISU were mega-fundraisers. As previously reported, we have been trying for two weeks to get grant and publication data for all of those considered for tenure by ISU, but the university has stonewalled our open records request. It now claims it will start to deliver the requested information next week. Once we get the data, we will see whether grant funding is truly a required criterion for tenure at ISU. If it is, ISU needs to revise its own published policies on tenure and promotion. If it isn’t, ISU’s effort to use fundraising as a reason for denying tenure to Gonzalez is clearly a sham. Regardless, Gonzalez exceeded his department’s stated criterion for research excellence—refereed publications—and he should have been evaluated on that basis.

    "Overall evidence of future career promise." Surely the main evidence of an academic scientist’s future career potential is his ability to generate refereed publications as well as the impact of those publications on his discipline. Yet it is clear that Gonzalez stood out in both areas.

    Which brings me to the proverbial elephant in the living room that Geoffroy’s statement conspicuously avoids: intelligent design. As previously reported, at least two members of Gonzalez’s department (including his department chair) have publicly acknowledged that intelligent design played a role in the tenure denial. Two additional department members have been tied to a national statement denouncing intelligent design as “creationist pseudoscience.” This is in addition to the 2005 petition in which more than 120 ISU professors argued that all faculty at ISU have a duty to repudiate intelligent design, thus imposing an ideological litmus test at ISU. Yet Geoffroy in his statement is completely silent on the controversy over intelligent design at ISU. He acts as if it doesn’t exist. When pressed to comment by the Ames Tribune, Geoffroy reportedly insisted that intelligent design played no role in his decision. What about in previous evaluations of Gonzalez at the lower levels of ISU before the tenure application reached Geoffroy? Can Geoffroy assure the public that ID was not considered at these lower levels when ISU faculty have stated otherwise? And how can Geoffroy expect people to believe that his own decision was not tainted by the anti-ID prejudice among faculty at ISU, especially when his decision seems contrary to ISU’s published standards for tenure?

    Statement of Guillermo Gonzalez on Tenure Appeal Denial

    Guillermo Gonzalez has issued a statement about the rejection of his tenure appeal by ISU President Gregory Geoffroy:

    I learned on the morning of June 1, 2007 that President Geoffroy has denied my tenure appeal. I understand that this was a very difficult decision for him to make given its far-reaching implications. It is now clear to me that this decision, in effect, had been predetermined by August 2005, when Hector Avalos and other ISU professors began circulating a petition statement condemning Intelligent Design. At the same time several of the same ISU faculty spread misinformation about me and the nature of my Intelligent Design research in the local press. These events poisoned the atmosphere among the faculty and administration on campus towards Intelligent Design, and, ultimately, impacted negatively on my tenure evaluation. It is unfortunate that the personal religious and ideological beliefs of some faculty have been so influential on this issue.

    Ultimately, the decision to deny or grant tenure is a subjective one, based not only on published objective academic criteria, but also on such ill-defined criteria as the perceived standing among peers and whether the mission of the university is advanced. My publication record must be balanced against other aspects of my professional research. It is in the way the separate factors are weighted that personal biases and political pressures can influence the final decision. I continue to believe that I have met my department's and the university's criteria for tenure. I have not yet decided whether I will appeal the decision to the Board of Regents.

    Gonzalez Tenure Appeal Rejected

    The Ames Tribune has reported that the tenure appeal of Iowa State University (ISU) astronomer Guillermo Gonzalez has been denied by ISU President Gregory Geoffroy. It's a sad day for academic freedom. A statement by Geoffroy defending his decision can be found here, while a statement by Gonzalez disputing the decision can be found here.

    June 1, 2007

    Iowa State University Thwarts Open Records Law in Gonzalez Case: What Does It Have to Hide? (Updated)

    UPDATE (12:45 pm): Within the hour of our posting of this story, we received a communication from ISU's university counsel that states: "We believe we can start sending some material to you early next week, but since we don't have most of the submissions from the departments yet, I don't know how long it will take to complete the process." Well, better late than never. The power of the blogosphere is demonstrated once again! We will be interested to see how many documents we actually do receive next week.

    For the past two weeks, Discovery Institute has attempted to obtain data from Iowa State University (ISU) about the record of publications and grants of those considered for tenure by the university over the past several years. Unfortunately, ISU has thus far stonewalled these requests for information, even when submitted pursuant to Iowa's open records act.

    Why?

    On May 16, Discovery Institute filed a public document request under Iowa's open records act in order to obtain the grant and publication data of faculty considered for tenure in ISU's Department of Physics and Astronomy since 1997 and for faculty in other departments considered for tenure since 2002. Thus far the university has provided no data in response to these requests, nor as of today has it responded to repeated requests about when the requested information will be provided.

    We also have requested statistics on the race and gender of those denied tenure at ISU. After ISU's John McCarroll refused to answer that question, we submitted it under the open records act as well--but, again, ISU has stonewalled rather than provide the data.

    ISU apparently doesn't want the public to have access to this information. What does it have to hide?

    The Truth about Research Grants, Gonzalez and ISU

    As evidence has mounted that intelligent design played a role in the denial of tenure to gifted astronomer Guillermo Gonzalez at Iowa State University, efforts to distract attention from that fact have also increased. The latest salvo is a one-sided article in today's Des Moines Register that implies that inadequate research funding must have been the key factor. Reading like it was produced by ISU's press office, the article distorts Gonzalez's actual research funding as well as the published standards at Iowa State. The article follows unfounded speculation at various websites and blogs where some people have falsely claimed that Gonzalez had no research funding at the time he was at ISU. Here are the facts:

    1. As we have reported previously, outside research funding is not a published criterion for earning tenure in Dr. Gonzalez's department. Indeed, it isn't even mentioned in the departmental standards for tenure and promotion. So if this factor was considered key in his tenure denial, Gonzalez's department was applying a criterion outside of its own stated standards. (The primary standard according to the departmental policy on tenure and promotion is peer-reviewed publications, and 15 articles are "ordinarily" supposed
    to "demonstrate excellence sufficient to lead to a national or international reputation." Dr. Gonzalez has 68 peer-reviewed publications, or 350% more than the departmental standard. Twenty-one of these articles were published since 2002, the year after Dr. Gonzalez arrived at ISU.)

    2. Contrary to some reports, Dr. Gonzalez did receive outside grant funding during his time at ISU:

    From 2001-2004, Dr. Gonzalez was a Co-Investigator on a NASA Astrobiology Institute grant for "Habitable Planets and the Evolution of Biological Complexity" (his part of the grant for this time period was $64,000).

    From 2000-2003, Dr. Gonzalez received a $58,000 grant from the Templeton Foundation. This grant was awarded as part of a competitive, peer-reviewed grant process, and his winning grant proposal had been peer-reviewed by a number of distinguished astronomers and scientists.

    Earlier in 2007, Dr. Gonzalez was awarded a 5-year research grant for his work in observational astronomy from Discovery Institute (worth $50,000).

    3. Using selective figures provided by ISU, the Register implies that one was expected to bring in an average of $1.3 million in grant funding to get tenure in Dr. Gonzalez's department. Again, there is nothing in the departmental standards about this, and it is hard to know how accurate or comparable this figure is without seeing the specific data for all of the astronomers in the department, and without seeing comparable data from other departments at ISU. Unfortunately, ISU has thus far stonewalled efforts to get grant and publications data for those considered for tenure during the past several years. On May 16 Discovery Institute filed a public documents request for the grant and publication data of those considered for tenure in Dr. Gonzalez's department since 1997 and for faculty in other departments considered for tenure since 2002. Thus far the university has provided no data in response to these requests, nor as of today has it responded to repeated requests about when the materials will be provided.

    It is worth pointing out again that 91% of ISU faculty considered for tenure this year received it. Did they all receive more than a million dollars in grants order to get tenure? Did they all exceed by 350% their departmental standards for publications? We are trying to find out, but ISU apparently doesn't want people to know the answers to these questions.

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