« March 2006 | Main | May 2006 »

April 29, 2006

Intelligent Design Classes Appearing on More College Campuses

With the rise in public desire for information about intelligent design and the overall debate over how to teach evolution it is no surprise that we're seeing more classes on intelligent design at colleges, albeit usually in philosophy as opposed to science. Much attention has been given to the future course on ID recently announced at Cornell. But, Knox College is just now finishing a course on the subject.

From the media report it's a little hard to tell what the actual content of the course was. But according to the professor Martin Roth students seemed to appreciate the chance to learn about ID.

"All of the students are now very much aware that the issue is far more complicated than implied by the media,” Roth added."
Here's the reading list:
"The principal reading material was Debating Design by Michael Ruse as well as excerpts and articles by William Dembski and others on intelligent design and natural selection. In addition, the class studied some chapters of Phillip E. Johnson’s Darwin on Trial and Moral Darwinism: How We Became Hedonists by Benjamin Wiker and Dembski."

April 28, 2006

Catholics, Evangelicals Defend Intelligent Design

Dr. George Coyne, the University of Arizona astronomer and Jesuit priest who is also head of the Vatican Observatory has been speaking to whatever Darwinist group will have him on the topic of why intelligent design "belittles God" and should be opposed by Catholics, who, indeed, should welcome Darwin's theory in all its glory. Coyne has infinite Christian charity and patience for Darwinists who diss God, but none at all for his co-religionists who doubt Darwin.

A news article last week in the National Catholic Register that merely reported Coyne's provocative views sparked a spate of letters this week (April 30-May 6 issue--not yet available online) rebuking Dr. Coyne for misrepresenting ID (among other things he called it "a fundamentalist movement") and for attacking Cardinal Schoenborn of Austria. The cardinal, of course, has emphasized the Church's longstanding commitment to the reality of design in nature and has pointed out the folly of full-blown Darwinism. At the end of the extensive letters column the editors make clear that they were not endorsing Coyne's views. In fact, they state, "Our editorial position...is very close to that of the Discovery Institute."

The same issue carries a droll and insightful column by CatholicExchange.com editor Mark Shea--"Lack of Intelligence about Design"--that also takes the critics of ID to task. Shea suggests that Catholics read Romans 1:20 where St. Paul points to God's eternal power that "has been clearly perceived in the things that have been made." Shea asks why, then, signs of intelligent design that can be examined scientifically should pose any obstacle to Catholics. Like the Register's letter writers, he observes that Darwinists can only succeed in discrediting ID if they can get away with misrepresenting it. "The longer I listen to the debate," he writes, "the more I do detect a real note of fearful defensiveness--from the partisans on the ramparts of the citadel of evolutionary orthodoxy."

Evangelicals also are weighing in on the theme of what makes a fair debate on evolution; to wit, John Wilson's fine essay, "Science in Wonderland," in the April issue of Christianity Today. Wilson, the editor of Books & Culture, broadly describes "250 millions years" of evolution controversy. Among other things, he examines the latest academic hypocrisy that would disallow ID but professes excitement about string theory as a response to the charges against materialist explanations of cosmology and life's origins. String theory, multi-verses, parallel universes; it's all very stimulating conjecture, but it doesn't generate any evidence.

"The contempt that many scientists have expressed for Intelligent Design knows no bounds, but it can be summarized in a single dismissive sentence: 'It's not science.' Now string theory--that's another matter," Wilson quips. "String theory generates articles and grants and symposia."

The Dogma of Darwinian Evolution

Human Events Online has published a wonderful little essay by Greg Frankey explaining how liberal organizations like the ACLU and Americans United for Separation of Church and State are working to keep any mention of intelligent design out of public school classes of any stripe, let alone science classes.

In arguing so he shows how the teaching of evolution itself is nothing more than dogma, and points to some of the more pressing problems with the whole theory.

As counterintuitive as it seems that a species could develop new physical traits simply because such a mutation might be advantageous (can we all learn to fly or to breathe underwater if we just wish to long enough?), it simply defies credulity to think that human beings not only physically evolved from ape-like creatures, but developed the ability to think rationally by a similar process.

Certainly this would be an unprecedented phenomenon, entailing a much more extreme manner of natural selection than that which is known to occur.

According to Casey Luskin, Public Policy spokesman for the Seattle-based Discovery Institute, which is seeking to establish the right of teachers to question Evolutionary theory, the question isn't whether it would have been advantageous for man to develop the ability to reason -- of course it would have. The real question is whether mutations are capable of producing this. "This certainly seems to strain Darwin's theory. It appears that something else has to be added to the equation to explain human complexity."

Readers interested in this particular topic of the whole debate would be well severd by going back and reading David Berlinski's award winning article "On The Origin of Mind."

In wrapping up Frankey writes:

The reality is that simply accepting Darwinian dogma in spite of the many troublesome questions that arise entails far more faith than simply subscribing to Intelligent Design -- or believing in God. This is not to state with finality that evolutionary theory is false -- only that there are enough substantive problems with it that attempting to characterize it as all but factual, and therefore immune from challenge is a fundamentally flawed view.

April 27, 2006

Chapman’s Take: A Great Night for Intelligent Design

Last night's debate before 800 at Town Hall in Seattle was a notable success for Dr. Stephen Meyer, Discovery Institute and the case for intelligent design. The Seattle Times co-sponsored the "Talk of the Times" event with Town Hall and their respective representatives seemed surprised by the large public response. Like some of the local Darwinists with whom I and other Discovery staff spoke afterwards, they probably were surprised also by the outcome. Call it a technical knockout.


David Postman of The Seattle Times, Dr. Stephen C. Meyer and Dr. Peter Ward

Several University of Washington professors came to provide moral support to Dr. Peter Ward, the well-known UW astrobiologist, but they may have wondered why he had agreed to debate in the first place. Ward is smart, avuncular and funny in a sarcastic way. But he thinks he knows more about ID than he does and he was trying to catch up to the pace-setting Meyer all the way.

Meyer had one strategy going into this rare event: talk about the science and don't let the debate degrade into name-calling. David Postman, a political correspondent for the Seattle Times, whose front-page piece for yesterday's paper had been criticized by us for misreporting the definition of intelligent design, allowed Meyer to open the "conversation" with his own explanation of ID. Ward's repost that ID was just "dogma" was limp.


At times the discussion was pointed, other times humorous.

The definition of ID led to discussion of the evidence for design (and why it is not an argument from ignorance), the replies to critics' demands that ID proponents show how ID is testable and makes predictions, the philosophical assumptions that define science, the way design is found in the cell's digital code, the centrality of information, nanotechnology, and the Cambrian Explosion. All these topics were concisely and engagingly explained by Meyer, even while Ward tried to throw him off with repeated interjections ("It's not a 'theory'!) and rude distractions (a charade of shoveling, for example, to which Meyer rejoined, not losing his place, "That's a gesture, not an argument").

Ward's histrionics didn't work or impress anyone other than the more ribald Darwinists present, and not even all the Darwinists were pleased. His opening gambit was a characterization of ID as mere "politics", after which he attacked George Bush! Postman, the moderator, took immediate note that the only person bringing up politics was Ward himself.

Postman turned out to be an adroit and fair moderator, giving just enough slack to each speaker. He guided the debate rather than controlling it.


The sold-out audience of 800, many students, packed Town Hall

The debate was taped for broadcast by TVW and the Seattle Channel and will be shown throughout Washington State and those parts of Oregon and Idaho that get Washington stations. Viewers can see for themselves what happened. (Meanwhile, we will soon put an audio version up on our website.)

If it achieves nothing else, the Ward-Meyer encounter will demonstrate that efforts to misrepresent ID based on supposed motives, funding sources, or political and religious implications cannot substitute for scientific debate. Darwinist critics of ID like Ward evidently don't bother to study the work of ID scientists, so in a debate they are left parroting stereotypes that they have read from the likes of Barbara Forrest. That's about all they know, it seems. They make charges of religious motives, but they are the ones talking about religion. (Out in front of Town Hall, a booth was set up to sell books attacking ID and promoting such great works as "Atheism: the Case Against God.") After constantly trying to answer Meyer's scientific arguments with aspersions on his personal faith, Ward was asked about his own religion. He dodged and dodged and finally quipped, "This week I think I'm a Druid." Right. Still, Ward did denounce Richard Dawkins for his emphasis on Darwinism as an argument for atheism.


Peter Ward and admirers

Ward talked about his former UW colleague, astronomer Guillermo Gonzalez in highly favorable terms in respect to his ability and record as a scientist, but then spoiled his own image by misstating the name of the book co-authored by Gonzalez, “The Privileged Planet” ("The Perfect Planet", Ward called it) and labeling it "Crap, trash." No reasons, no argument, just spite. It doesn't come off well. Ward is known as a fine teacher who is gracious and reasonable in person. Intermittently, he tries to convey that on stage. Unfortunately, he presents a very mixed message.


Ape protests, “I don’t want to evolve.” (No danger, pal.)

Disagreeing strongly with Meyer about whether the Cambrian Explosion makes a case against Darwin's theory, Ward pleasantly invited Meyer to appear at his UW class next month when the topic is discussed. But if there is no debate and ID isn't science, why bother? If ID, as he argued last night, hurts the prospects of America developing new scientists (rather than stimulating such development, as Meyer says), then why have an ID proponent in your classroom? Why, indeed, show up at a public debate?


Meyer greets his fans

But I hope that Peter Ward confirms his invitation for Steve Meyer to come to his class. Let the debate continue. The students will love it. Some may decide that science could offer a more fascinating career than they’d imagined.

Intelligent Design vs. Evolution Debate in Seattle Plays to Sold Out House

Last night, the Seattle Times Talk of the Times at Town Hall Seattle featured a debate over evolution and intelligent design between CSC Director Stephen Meyer and US paleontologist Peter Ward. The event was sold out with 800+ in attendance for what turned out to be a really good debate.

David Postman of the Seattle Times did a fine job as the moderator of the debate. If you saw my post yesterday about Postman’s front page article in yesterday’s Times you know that I had some misgivings about his being the moderator. However, I have to congratulate him for his objectivity and balance, and his overall good job in keeping the debate both substantive and enlightening.

I especially appreciated the way he opened with the definitional question: what is intelligent design? Because his definition in yesterday’s paper inadequately described intelligent design, I think that this was a very good way to get the discussion started.

In speaking with many people afterwards –including both ardent ID supporters and staunch Darwinists-- it was obvious to everyone that Meyer clearly prevailed. Both debaters were engaging, but everyone I spoke with found Meyer to be more substantive and thoughtful with his answers. Meyer above all successfully showed that there is a debate about evolution and intelligent design and he showed that it is based on science, regardless of ancillary (and academically irrelevant) political or religious implications on both sides.

The debate last night was almost ALL about science--from gene sequencing, to nanotechnology, to the Cambrian explosion, to the philosophy of science that decides how to define the terms in the first place. Both scientists are experts in their fields and the audience was eager to hear what they had to say. No matter how much Darwinists claim there is no debate, and that intelligent design somehow kills curiousity, you can't argue with hundreds of people showing up to eagerly hear what both sides have to say about the issue. Clearly they were curious about the debate that doesn’t exist.

TVW and Seattle Channel both filmed the debate and over the next few weeks it will be broadcast statewide, and even into parts of Oregon and Idaho. So, residents of the Northwest will have a great chance to view the debate for themselves. We will find out when the debate is scheduled to air and post those times in our event listings on Discovery's main page, www.discovery.org.

Below is an excellent blow-by-blow account of the debate submitted by a Discovery colleague who attended and took careful notes.

Intelligent Design vs Evolution, Town Hall Seattle, Wednesday, April 26, 2006

A packed house at Seattle's Town Hall saw Dr. Stephen Meyer of the Discovery Institute debate Dr. Peter Ward of the University of Washington on the topic of "Intelligent Design v. Evolution." Meyer was excellent in his overall presentation. In my view, Meyer convincingly prevailed.

The two had previously debated for over an hour on a local Seattle radio program. That radio debate was a rather lopsided exchange, with Meyer clearly outshining Ward. Meyer made clear and reasonable arguments about the theory of intelligent design (ID) from scientific data, whereas Ward had offered little-to-no scientific response. Instead, Ward simply attacked Meyer's personal motives and made wild claims that students learning about the theory of intelligent design would somehow result in scientific decline and an undermining of our national security.

Back to Town Hall. This time Ward did not rely so thorougly rely upon wild claims about the theory of ID being the death of science itself. But attacks of that sort still seemed to be the mainstay of his arguments. He claimed that if students were to learn about the theory of intelligent design that the United States would fall behind in science and technology to China, Japan and other nations. Allowing the teaching of the theory of ID would lead to "intellectual mediocrity" in America, he stated. (To a large number of boos from the audience, I might add.)

Ward, in fact, asserted that ID is not a theory at all. He claimed it wasn't science because science excludes the supernatural. Ward also repeatedly asked Meyer why he used the terms "neo-Darwinian" or "Darwinist." At a later point in the debate, Ward claimed that ID proponents used those terms as a caricature to knock down. He also insisted that ID was neither testable nor falsifiable.

Specifically, Ward challenged Meyer to explain how the theory of ID could be tested or falsified. Meyer stated that the competing explanations of Drs. Michael Behe and Kenneth Miller concerning the bacteria flagellum and Type III Secretory Systems is something that could be tested to determine which one came first. Meyer countered that neo-Darwinian evolution had been heuristically unfruitful in leading science to think that non-encoding DNA was simply "junk." Meyer insisted that design assumptions more readily led one to conclude there was purpose in such "junk DNA." And he also cited Dr. Jonathan Wells' hypothesis concerning centrioles and its implications for cancer as research inspired by a design theoretic.

Furthermore, Meyer cited a recent article in Science purporting to "refute" Behe's ideas concerning irreducible complexity. Meyer insisted that he and Behe and others disputed the weak claims to have refuted irreducible complexity, but that the important fact was that the scientists were taking the idea seriously enough to try to combat it through scientific research and argument.

Meyer held his own against Ward, and then some. At the outset he defined the theory of ID as holding that certain aspects of the universe and of living systems are best explained by an intelligent cause, rather than an undirected cause. He also made clear that the theory of ID is not necessarily antithetical to "evolution." Meyer proceeded to delineate three different definitions of "evolution," to which he would occasionally refer back to throughout the evening: 1) "evolution" as "change over time"; 2) "evolution" as "common ancestry" or "universal common ancestry" of all biological life; and 3) "evolution" as natural selection acting upon purposeless or unguided processes such as random mutation. Along these lines, Meyer also made clear that the theory of ID is not merely a negative argument against the creative powers of neo-Darwinian evolution. The theory of ID, in its positive aspects, is simply the inference to the best explanation of observable data based upon our general knowledge of cause-and-effect relationships that we experience on a daily basis. (He went back to this many times for reinforcement.)

Meyer spoke at some length about the digital code contained in DNA. He described how, in our everyday experience, we attributed software code to software designers. Meyer likewise pointed to intricate molecular machinery and nanotechnology found in living systems. He then cited Richard Dawkin's dictum about biology being the study of living things that gave the appearance of being designed for a purpose. Meyer insisted that he took the opposite view of Dawkins, in that living systems appear designed because they really are designed.

The earlier part of the debate also included some debate over the fossil record. Ward adamantly asserted that the "missing links" some had speculated were non-existent after studying the Burgess Shale had been uncovered in China. Meyer challenged him on this point. Ward kept cutting Meyer off, saying "trust me." Meyer cited to J.Y. Chen as a scientist familiar with those same fossils who concluded that Darwin's tree of life is not the picture of the history of life on earth. In reality, it is upside down. Meyer even managed to fit in that choice quote from Chen about how in China one can criticize Darwin but not the goverment, but that in American one can criticize the government but not Darwin. (A lot of applause on that one.)

Debate also turned to whether scientific curiosity would by stymied if students ever learned about the theory of ID. Ward, obviously, contended that people would give up on science and lose curiosity in the study of nature if students thought that living systems were designed. Meyer cited the fact that so many people attended the debate as a sign that curiosity is raised by controversies. Meyer got to briefly discuss the "teach the controversy" approach in public school science education.

Ward’s supporters in the audience didn't take to Meyer's statement that peer-review science journals are largely controlled by Darwinists. Meyer cited the fallout from the publication of his own article in the Proceedings of the Biological Society of Washington, and all that was done to the editor who published it. Ward said he read that article, but he jumped on the peer review issue quite a bit. Ward insisted that there were millions of papers in the literature supporting evolution, but almost none supporting the theory of ID, and none offering detailed explanations about how living systems are designed.

In terms of substantive arguments about science and philosophy of science, Meyer certainly surpassed Ward. He was better spoken and the most articulate. Ward's strength, however, came in his laid-back, casual attitude. Ward made a lot of jokes and wise cracks. (Meyer displayed good humor, as well.) Ward came across as someone who would probably make for an entertaining professor. However, on many occasions his jokes were simply flippant dismissals of Meyer's arguments and of the theory of ID, in general. Attitude can sometimes make up for lack of substance in a debate, and to some degree that was the case here.

Perhaps the most galling thing Ward said was in response to a question about his views of Dr. Guillermo Gonzalez's work in formulating ID in cosmology. Ward said that Gonzalez did some good science concerning the birth of stars. But he just insulted Gonzalez's book, The Privileged Planet, co-authored with Dr. Jay Richards. If I got the quote correctly, Ward simply said: "His book's a bunch of crap. It's trash." Ward had initially called the book "The Perfect Planet," before being corrected.

That was particularly galling to me. I read Ward’s book “Rare Earth” and enjoyed it. That Ward couldn't get the title of Gonzalez's book straight simply showed his contempt for it.

In contrast, Ward mentioned some reading he did like. He cited and read from Judge Jones's awful anti-ID opinion from Kitzmiller v. Dover Area School Board. If I got his quote right, Ward described it as "an intersting bit of reading that I think every American ought to read." He read from a portion of the opinion where Judge Jones wrote that the Dover Area School Board members were lying. Ward waved the opinion around as an authoritative source on the matter. (See DI's newly published response to Judge Jones, Traipsing Into Evolution.)

Meyer shot back effectively that science isn't decided simply by a judge in central Pennsylvania.

The issue of personal, religious beliefs and the influence that might have on the respective debaters viewpoints came up. Meyer acknowledged that he was a Christian and that his outlook probably made him more open to more explanations about reality and the natural world than philosophical materialists. Meyer insisted that scientists should decide things based upon evidence, rather than by motive-mongering. Ward, by contrast, would not answer about his own views. He stated he thought Dawkins was foolish for using evolution to carry the banner for atheism, since there were many devoutly religious scientists who accept evolution. Ward claimed that science and religion are in completely separate hemispheres, far apart from one another.

Overall, I think the debate went very well for Meyer and for the theory of ID.


April 26, 2006

Seattle Times Reporter Rides The Misinformation Train and Mischaracterizes Discovery Institute and Intelligent Design

Tonight, Seattle Times reporter David Postman will moderate a debate over intelligent design and evolution between CSC Director Stephen Meyer and UW Paleontologist Peter Ward. If Postman's article in the Times today is any guide, Meyer has his work cut out for him trying to correct and educate the moderator, as well as having to refute the typical mischaracterizations and misplaced attacks he'll likely hear from Ward.

The fact is that Postman came in to our offices and spent a fair amount of time interviewing Bruce Chapman, and separately going over the science of intelligent design (which is virtually ignored in Postman's piece -- funny for a discussion about a science issue) with Meyer.

Yet his piece is full of errors of fact.

"Intelligent design argues that life is so biologically complex, there must be some kind of supernatural designer involved. The concept, however, leaves the designer unnamed."
This one sentence is doubly wrong. No, ID is not an argument from ignorance. And, no, ID doesn't claim that the intelligent cause has to be supernatural. (Postman apparently so strongly believes this fallacy that he repeats it later in the story, a second time: "gaps that can only be explained by the presence of a supernatural designer.")

The first mistake is his definition which says that ID is just an argument from ignorance, in other words ID scientists are not arguing that things must be designed because we don't know how else it could have happened, but rather that the scientific evidence, the data, bears all the hallmarks of intelligent agency. We made this very clear to Postman and I'm bewildered as to why he persists in believing this caricature of his is what we are arguing, when it clearly is not. Unfortunately, he's not alone, we've reported extensively about the problems some reporters have in accurately defining intelligent design.
The theory of intelligent design holds that certain features of the universe and of living things – such as the digital code in DNA and the molecular machines in cells— are best explained by an intelligent cause, not an undirected process such as natural selection. When defining intelligent design many reporters leave out the important first half of that definition and focus on the secondary clause at the end -- a very annoying mistake that makes a big difference.

The second mistake Postman makes is claiming that ID proponents are pointing to a "supernatural" designer. This has been repeatedly refuted on our website, in our articles, and most recently in our own "stinging rebuke" to Judge Jones' Dover decision, "Traipsing Into Evolution." Intelligent deisgn scientists do NOT claim that the designer is supernatural, the empirical evidence --digital code in DNA for instance-- can't tell you that. What it can show is that that it has all the informational characteristics we find in objects we know were designed. Scientists like Michael Behe are using what they do know to show that there is evidence in the natural world that an intelligent agent had some role in bringing it about.

It isn't just the theory of intelligent design that Postman has trouble getting straight, it is the facts of what is going on in the public policy debate. He writes that:

"an effort in Ohio to include intelligent design in school curricula failed when some state school-board members said the Dover case settled the issue."
No, Ohio didn't propose intelligent design. That was NOT the issue in Ohio, as we pointed out repeatedly. The idea that Ohio (or Kansas, or anywhere other than Dover, PA) tried to insert intelligent design into the curriculum is completely false, and it stems from a clever PR scheme by Darwinists such as the NCSE. They repeatedly say that Ohio tried to put intelligent design into science classes, even when they didn't, and they say it so often enough that it gets repeated in newspapers as if it was a fact. They have had stunning success in lying to public. I myself explained this to Postman, and yet he fell right into the trap of misreporting what actually happened in Ohio.

Postman also reports on what others are saying about intelligent design, such as Rush Limbaugh: "Intelligent design is a way, I think, to sneak it into the curriculum and make it less offensive to the liberals." But, he opted not to include our response that this is simply not true. It isn't true when Darwinists say it, and it's still untrue when conservatives say it. We're not pushing ID into the curriculum, and ID is not a way to sneak creationism into public schools.

Postman seems a bit preoccupied with religion, and with ID scientists' personal religious beliefs.
"Leading Discovery Institute fellows also are clear they think God is the designer," he reports. This may be an interesting point, but it is irrelevant to whether or not there is a tiny molecular machine in some cells that has a proton motive force drive system, spins at tens of thousands of rpm, switches direction in a quarter turn, and even repairs itself. That's what we're talking about, and what ID scientists are researching.

We've explained how such motive mongering really is out of bounds. Does it matter what a scientist's personal beliefs are when doing laboratory experiments? No. Regardless, rather than be coy or disingenuous, ID scientists have been very upfront about their personal beliefs, which we've explained repeatedly.

Disovery's Casey Luskin develeoped an interesting analogy explaining what he calls the Darwinist Misinformation Train.

Point A represents the actual nature of intelligent design theory, where ID respects the limits of scientific inquiry and cannot identify the designer. At point A, ID relies upon the scientific method and makes no faith-based appeals to God. Here, it is pure science.

Point B represents where Darwinists would like to take ID theory: where it is an explicit appeal to the supernatural, and thus does not respect the inherent limitations of the scientific method. At point B, ID would have a clearly religious component as it identifies the designer as God. This would make it both unscientific and unconstitutional. Point B is fiction, because, of course, ID respects science and is ultra clear that the theory cannot identify the designer and avoids such religious claims.

Luskin concludes:
"The moral of this story is that you can’t go from Point A to Point B by going in opposite directions. Darwinists can’t criticize ID on the one-hand because [as they claim] it does identify the designer as supernatural, and then on the other-hand because it doesn’t, and then both claim that ID isn’t science. For those interested, the truth is that ID theory does not identify the designer, doesn’t even focus on studying the designer. While ID proponents may have beliefs about the designer, those beliefs are not derived from ID theory."

Let's hope that Postman is just a passenger on the Misinformation Train and not its driver. Tonight Dr. Meyer will stop the train and give him ample time to get off, and get on the right track.

April 25, 2006

Fair Fight Over Darwinism and Design in North Carolina

When the controversy over Darwinism and intelligent design is debated on university campuses, the deck is usually stacked heavily against proponents of intelligent design. North Carolina State University has shown, however, that the topic can be debated with the fairness and civility that ought to characterize academic discussions. On Thursday, April 20, before a crowd of some 200 people, a biologist and philosopher defended intelligent design, and a biologist and philosopher defended Darwinism.

That debate continued Thursday night at N.C. State University before a crowd of almost 200 people. Sponsored by the NCSU and Wake chapters of the American Civil Liberties Union, the debate featured four speakers -- one scientist and one philosopher from both sides of the issue.
The North Carolina State University debate showed that it is possible to proceed on this toipic in a manner that accords with traditional academic freedom and mutual respect. The same goes for the way Tim Simmons reported it for the News Observer.

Forty years ago, the New Left political philosopher Herbert Marcuse argued that old fashioned liberal education and public discourse was wrong, that tolerance for varying views should be extended only to people on the Left. That stance seems to have won many advocates; author Chris Mooney is one example, and the editorial page editors of The Washington Post are another (on this issue, at least). Fortunately, saner heads prevailed in North Carolina."

April 24, 2006

Evidence for Human Evolution Still Scant and Controversial After 25 Years

A post made 2 weeks ago highlighted how in 1981, Constance Holden wrote in Science that emotions, rather than abundant evidence, often rule the field of paleoanthropology and its claims about human evolution. Yesterday, an article by Charles Matthews in the San Jose Mercury News reiterates that same point. Reviewing a book by Ann Gibbons, Matthews notes:

"Gibbons, who reports on human evolution for Science magazine, gives a lucid account of the science involved in finding fossils, establishing how old they are, and ascertaining whether they in fact belong to the ancestors of humankind. She also shows how difficult and sometimes dangerous the work of hunting for 7 million-year-old fossils can be. And that, like most humans, anthropologists are subject to such emotions as ambition and jealousy, especially when they're Indiana Jonesing for the next big find." (Discovering fossils can be difficult and dangerous by Charles Matthews)

The book is said to document the many unfortunate hardships experienced by paleoanthropologists while in the field. While the commitment of paleoanthropologists to their research is admirable, one can only wonder how these hardships would strengthen one's psychological commitment to one's favored view of human evolution. This is especially poignant when one considers that their hypotheses are based upon little evidence:

"We're not talking about complete skeletons but about teeth, the occasional jawbone or skull or thighbone, sometimes on the verge of crumbling into chalky dust.

[...]

'Together, the fossils collected in the 1990s and early 2000s would cover a large desk and would represent a few dozen individuals at least,'' she notes. But too many pieces are still missing from the puzzle -- including fossils of the ancestors of our closest relatives, chimpanzees and gorillas -- to allow for a clear picture of the evolutionary lineage." (Discovering fossils can be difficult and dangerous by Charles Matthews)

This gives pause to ask whether statements we often hear affirming some hypothesis about human evolution are based upon clear evidence. Yet compare Gibbons' findings to what Constance Holden wrote in 1981:

"The field of paleoanthropology naturally excites interest because of our own interest in origins. And, because conclusions of emotional significance to many must be drawn from extremely paltry evidence, it is often difficult to separate the personal from the scientific disputes raging in the field.

[...]

The primary scientific evidence is a pitifully small array of bones from which to construct man's evolutionary history. One anthropologist has compared the task to that of reconstructing the plot of War and Peace with 13 randomly selected pages. Conflicts tend to last longer because it is so difficult to find conclusive evidence to send a theory packing." (Constance Holden, "The Politics of Paleoanthropology," Science, p.737 (August 14, 1981).)

Perhaps very little has changed in the past 25 years.

Bowman Law Review Makes Good Points but Article Misunderstands ID

Legal commentary mentioning the Kitzmiller decision is now starting to appear in legal journals. In the Spring, 2006 issue of the Harvard Journal of Law & Public Policy, one of the most widely circulated law journals, the lead article addresses intelligent design, Kitzmiller, and the establishment clause.

Cristi L. Bowman’s article, “Seeing Government Purpose Through the Objective Observer’s Eyes: The Evolution-Intelligent Design Debates,” is available here.

Most of the article is about establishment clause jurisprudence, and an argument against part of McCreary County v. ACLU. Bowman argues that the government purpose prong of the Lemon test should return to focusing on “actual intent,” rather than trying to evaluate government purpose with an “objective observer.” Kitzmiller and the evolution-intelligent design controversy serve as the article’s setting for how the objective observer standard will play out in future establishment clause cases.

The article’s argument against expanding the use of an objective observer points out the convoluted status of establishment clause jurisprudence. The Lemon test is virtually impossible to apply consistently, particularly when the courts attempt to evaluate government purpose. One can only hope that the Supreme Court may revisit this and other aspects of establishment clause law in the near future.

Part’s III and IV of the article focus on the establishment clause argument. Part II reviews the evolution-intelligent design controversy. While Bowman presents a fairly accurate picture of the dispute, the article fails to accurately represent intelligent design. Ultimately, the mis-portrayals of intelligent design do not undermine the article’s main point, but are worth noting and rebutting.

Bowman argues that the objective observer standard for determing purpose in the McCreary County case should not be used for government purpose analysis, but rather that courts should use an "actual government" purpose standard. Because the Kitzmiller ruling looked to actual government purpose, focusing on private statements from individual school board members and assessing their personal religious motivations, the decision went beyond the McCreary County standard to look at the specific, subjective intent of the Dover school board members. Bowman believes that the method used in Kitzmiller--delving deep to find actual purpose--is better than the objective observer standard set out in McCreary County.

While many supporters of intelligent design share Bowman’s skepticism of the objective observer as used in government purpose analysis, Bowman’s article is motivated by a desire to allow religious motivation of ID supporters to be “outed,” which she contends cannot happen if courts follow McCreary County. Bowman believes that Kitzmiller did not strictly follow McCreary County in this regard, making the article a defense, of sorts, for Kitzmiller’s new form of government purpose analysis.

Questionable Treatment of Intelligent Design
To be clear, Bowman presents intelligent design in a more accurate light than many of the critics. For example, she recognizes that “intelligent design advocates’ purpose is nearly always less overtly religious than that of traditional creationists.” (423). Bowman provides an overview of evolution, then creationism, and then intelligent design, thus resisting the common attempt to equate intelligent design with creationism.

Under the evolution overview, Bowman harps on the point that evolution is compatible with religion (citing Kenneth Miller, and the NCSE). Under the creationism overview, Bowman nicely distinguishes between young earth creationism, and old earth creationism. Both overviews cite to primary source literature from proponents of the viewpoint.

The intelligent design overview, by contrast, has lax citation to proponents of the viewpoint, and presents many critiques. For example, Bowman frequently cites to news reports to represent intelligent design arguments, as opposed to actually letting the intelligent design proponents represent their views. (See her footnote 53, p.432, which cites to three newspaper reports to establish the position of “intelligent design proponents.”)

Bowman presents two main intelligent design ideas, both with questionable accuracy. First she presents Behe's irreducible complexity, claiming that it "in a significant sense rekindles the argument presented in 1802 by William Paley." (432). Bowman presents a rough version of Behe's arguments for irreducible complexity. Bowman fails to mention a single irreducibly complex system highlighted in Behe's book, Darwin's Black Box, not even Behe's infamous flagellum or blood clotting cascade examples. She does, however represent Behe's book as arguing that "the cell" (in general apparently) is irreducibly complex. Bowman cites page 10 of Darwin's Black Box, which as best as I can determine, is the introductory chapter explaining reccent advances in microbiology, not actually an argument that "the cell" is irreducibly complex. Given this odd citation and inaccurate representations of Behe's book, it seems doubtful that the author has read much of Darwin's Black Box.

Regarding peer-reviewed literature, Bowman notes that ID is “almost entirely absent from peer-reviewed journals.” The footnote here notes only two articles, and refers to Steven Meyer’s article in the Proceedings of the Biological Society of Washington as “the only intelligent design argument published in a peer-reviewed scientific journal,” and the that the journal issued a statement saying the article did not receive proper peer review. This clearly under-represents the presence of intelligent design in peer-review literature, (see here for a good list) and is only one article better than Judge Jones flawed treatment of the issue in Kitzmiller. What is more, Bowman accepts the repudiation of Meyer’s article as if it were relevant, failing to nuance the highly political nature of the PBSW’s statement, which was pushed by the NCSE as damage control.

Bowman recognizes William Dembski’s arguments as a second main argument for intelligent design. However, the article representation of Dembski has even more problems than the section representing Behe. The section about Dembski’s “odds based” (Bowman’s words) argument fails to cite Dembski directly. (p.436). Bowman introduces Dembski as “Southern Baptist Theological Seminary professor and mathematician William Dembski,” a technically correct statement that seems designed to undermine Dembski’s qualification as a scientific expert, who holds Ph.D’s in both mathematics and philosophy from leading secular universities. The article, perhaps not surprisingly, presented Dembski’s arguments in a very weak, simplified form.

Furthermore, throughout the overview of intelligent design, Bowman makes a surprising number of unsupported claims that can only leave the law review reader accustomed to careful citation puzzled. For example, “Aside from Behe, Dembski and a few others, [cites Discovery.org] most of intelligent design’s visible proponents are not scientists or even academics.” (p.436). Bowman provides no citation at all for which “visible proponents” are not scientists. Earlier, Bowman claims that intelligent design proponents see “evolution’s silence about divinity is viewed as hostility towards religion.” (434). This claim is completely unsupported, and ends with a curious citation where Bowman reveals that she considers herself to be an evolutionary theist. Finally, Bowman claims that “many of intelligent design’s strongest proponents are fundamentalist Christians.” (438). She provides no definition for “fundamentalist” and gives no citation whatsoever for this claim, leaving it as a bare assertion. These are all claims made against intelligent design that must, at minimum, be supported under standard law review protocol.

Conclusion
The article does not accurately present intelligent design. It does a fair job generally representing intelligent design, and certainly is more accurate than many of the arguments made by critics of intelligent design. This misrepresentation of intelligent design, however, has very little effect on her main argument. The unfair treatment of intelligent design is unfortunate, but the article, in the end, has more to do with establishment clause case law and less to do with critiquing intelligent design.

Bowman’s call to eliminate the objective observer standard from McCreary County from the first prong of Lemon does not depend on the specifics of the intelligent design controversy. Ultimately, Bowman makes it clear that she views the religious views of intelligent design supporters to be highly relevant for establishment clause purposes. Yet she fails to consider what might happen to the teaching of evolution if the anti-religious motives of many of its leading supporters were equally scrutinized in the courtroom. (Anti-religious motivations of many leading proponents of Darwinism are discussed here, and the inappropriate legal double-standard is discussed extensively in Traipsing Into Evolution.)

Even though Bowman believes that Kitzmiller was right to focus on religious motivations of the school board members, the article also demonstrates how unstable and messy the establishment clause jurisprudence has become. This legal argument, defending the extensive probing of religious motivation, would arguably make the law more hostile to intelligent design. However, the article can also be read as a valid commentary on the convoluted and confused state of establishment clause case law.

April 21, 2006

The Role of Evolution in Biomedical Research is Highly Exaggerated

Darwinists claim that their theory is the foundation of all science. Indeed, we are often told that nothing in biology makes sense except in the light of it.

In a news article last November, a Stanford biologist claimed he had been guided in his research by Darwinian evolution:

"Researchers at the School of Medicine uncovered obestatin [an appetite-suppressing hormone] by using the principles of evolution to pick clues from data held in the Human Genome Project, as well as the genome sequencing projects for many other organisms, among them yeast, fruit flies and mice. 'Darwin led us to this new hormone,' said senior author Aaron Hsueh, an endocrinologist and professor of obstetrics and gynecology."
The Stanford press release continued:

"So why does Darwin's theory deserve some credit? Hsueh explained that before he and his colleagues started the project, they used the genome projects' information to create a database of GPCRs that grouped them according to their evolutionary relatedness."
The actual report in Science (310 [2005]: 996) was more subdued:
"The discovery of amidated obestatin and its cognate receptor underscores the power of comparative genomic analyses." The article's only reference to evolution was a speculation that two of the molecules studied "could have evolved from a common ancestor but diverged in their functions."
According to Dr. Jonathan Wells, a Berkeley-trained molecular biologist and CSC senior fellow , what really led the researchers to their discovery was comparative genomics, a combination of comparative biology and genetics that owes nothing to Darwinism. Evolution was brought in as an afterthought.

Last year, Dr. Philip Skell, Emeritus Evan Pugh Professor at Pennsylvania State University and a member of the U. S. National Academy of Sciences, wrote in The Scientist that he

"examined the outstanding biodiscoveries of the past century: the discovery of the double helix; the characterization of the ribosome; the mapping of genomes; research on medications and drug reactions; improvements in food production and sanitation; the development of new surgeries; and others. I even queried biologists working in areas where one would expect the Darwinian paradigm to have most benefited research, such as the emergence of resistance to antibiotics and pesticides. Here, as elsewhere, I found that Darwin's theory had provided no discernible guidance, but was brought in, after the breakthroughs, as an interesting narrative gloss."
Dr. Wells agrees. In his forthcoming book, The Politically Incorrect Guide to Darwinism and Intelligent Design (Regnery, 2006), he provides many examples in which Darwinists take credit for advances in biology and medicine that owe nothing to evolutionary theory.

Here are two brief excerpts from Wells's book, due out later this year:

"Bruce Alberts claims that Darwinism is 'at the core of genetics.' Yet Mendel had no need for Darwin's hypothesis. How can Darwinism, which contributed nothing to the origin of genetics and resisted it for half a century, now be at its core? It is Darwinism that needs genetics, not genetics that needs Darwinism."

and
"Darwinists sometimes claim that their theory helps us to understand which animals are most closely related… on the basis of their genetic and biochemical similarities. But this is just comparative biology at the level of genes and proteins. Linnaeus did comparative biology, yet he was a creationist who lived a century before Darwin; Owen and Agassiz did comparative biology, yet they rejected Darwin's theory."
So comparative genomics, like most other fields in biology, owes nothing to Darwinism. The obestatin research featured in the Stanford press release illustrates the points made by Skell and Wells.

April 20, 2006

Now That Science Magazine Recognizes That Behe's Theory of Irreducible Complexity Is Science Will They Let Him Respond

The contention that biochemist Michael Behe's intelligent design argument of "irreducible complexity" (IC) is not science was undercut in a recent issue of Science magazine which contains a paper purporting to falsify the theory.

If it's not science, why bother to try to falsify it? Further, the hapless case made against Behe’s theory--as Dr. Behe explains in his detailed response--shows that irreducible complexity is also good science.

Unintentionally, this paper in Science puts the lie to the whole line used in the Dover trial against Behe and his theory of irreducible complexity. It will be interesting to see whether Science lets Behe reply to the Thornton paper in its pages.

If you can't find it in Science, you can read it elsewhere. Here's a page with links to several articles about irreducible complexity.

UT Professor, Others Support Forrest Mims’ Account of Evolutionary Ecologist Eric Pianka's Speech

After scientist and science writer Forrest Mims described University of Texas ecologist Eric Pianka's speech to the Texas Academy of Science in which he expressed a longing for an ebola virus to wipe out 90 percent of the world's population, Pianka's defenders quickly went on the attack, claiming that Mims had wantonly misrepresented Pianka. But several lines of evidence suggest that Mims described Pianka's speech quite accurately.

James Redford provides an excellent one-stop post of these various lines of evidence here. William Dembski reports on a UT professor corroborating Mims' account, as does Richard Pearcey here. Our original posts on the subject are here and here.

The real news story in this case isn't that a lone scientist, Pianka, expressed such alarming views. The academic establishment has had more than its share of Pianka's sort for years. The frightening thing is that he was apparently given a standing ovation for his holocaust dream by numerous members of the Texas Academy of Science, who even voted him the 2006 Distinguished Texas Scientist.

Meanwhile, tax dollars from Texas and the rest of the United States continue to fund Pianka's UT position while scientists who argue that design is detectable in the natural world are judged anathema by the academic establishment supported by these tax dollars. This is a curious situation. At least 90 percent of the voters and taxpayers of our country find Pianka's views not only repugnant but dangerous. But they are made to subsidize the views of Pianka and the entire American-hating, humanity-loathing radical left that currently has a stranglehold on most of the top public universities in our country. Moreover, fully 90 percent of our voters and taxpayers find obvious the idea that nature provides clear indicators of design, and yet they are made to subsidize the same academic establishment that deems such a view unacceptable among their scientists.

Is this 90 percent majority really so powerless that it cannot reform the situation? I suspect that Pianka, at least, knows better, and dreams at night that something will come along and make this 90 percent of the population disappear.

April 19, 2006

Who Owns the Term Intelligent Design? No One

Stephen Heller has an article at the Design Forum looking at semantics and asking who it is that owns the term intelligent design. It's an issue that has a lot of relevance for Heller's audience since they are all graphic designers. Design Forum is a part of the website of the AIGA, -- American Institute of Graphic Arts. In Heller's world "intelligent design" has a much different meaning than in my world. His concern seems to be that the phrase has different meaning for some people than it does for him and his colleagues.

When I hear a graphic designer comment on intelligent design I know that most likely he's talking about a graphic image of some sort. Or, these days, making a bad play on words. Of course, this is why we have context.

Heller is mistaken on many levels. Of course no one owns the phrase intelligent design. One might ask: Who owns left-wing? Democrats or hockey players?

No one has ever tried to claim ownership of the phrase 'intelligent design.' It is simply the best way to explain the concept, which Heller actually does better than most reporters I deal with, explaining it as the idea "that life developed from deliberate natural design (perhaps from a higher being) rather than from random natural selection."

Heller's first mistake is within the realm of his own supposed area of expertise, marketing. He attributes the slogan "capitalist tool" to Fortune magazine, when in reality it was Steve Forbes (whom Fortune exists to compete with) who championed the term as a marketing slogan and personal catch phrase. I know because he gave me a nice, silk tie with the phrase printed all over it when he spoke at a Discovery event in 1996. I should wear it more often.

Still, as a product of today's MSM misinformation juggernaut Heller might be excused for his second mistake: being wrong about where the term 'intelligent design' came from. The term was not a reaction to court cases of the 1980s, anymore than the scientific theory it labels is simply a reaction to such legal rulings. It's absurd to think so, but Darwinists employ a clever PR scheme to convince the media, and ultimately the public, otherwise.

Jonathan Witt has an excellent essay, "On the Origins of Intelligent Design" which clearly explains the term and how it came to its present day usage. Witt writes,

"In reality, the idea of intelligent design reaches back to Socrates and Plato, and the term “intelligent design” as an alternative to blind evolution was used as early as 1897."
Heller's branding expert isn't wrong though:
"'Intelligent Design, if separated from any right-wing agenda,' says branding expert Brian Collins, 'could be a straightforward term for anyone who seeks proof that the unifying patterns of existence may be connected to a broader intelligence at work in the universe. Fair enough.'
Discovery spends a fair amount of time trying to keep intelligent design away from any so-called right-wing agenda. It's a scientific issue, albeit one that has become embroiled in policy debates. But, we take great pains to explain it as straightforward as Collins did. It is the Darwin-only lobby that is trying to make this a political, rather than a scientific debate.

But of course, there is no scientific debate. My bad.

Did eyes Evolve via Sexual Selection? Barry Lynn uses Stuffed Monkey, Porn Doll example, and other Strange Rhetoric to Oppose ID

Washington, DC -- Today, I participated in a panel discussion on intelligent design with the Reverend Barry Lynn at the University of Maryland’s Knight Center for Specialized Journalism. In the audience were reporters from newsmedia around the United States including the New York Times, LA Times, Chicago Tribune and many others, as well as some international journalists, who asked questions of myself and Mr. Lynn.

The “panel discussion” (do two participants make a “debate” or a “panel”?) was fun and there were many good questions from the reporters. During my opening comments, my primary points were that intelligent design is often described inaccurately by the media, who mischaracterize it by saying that “life is so complex that it couldn’t have evolved, therefore God / higher power / supernatural creator made it.” I explained that this definition is wrong because ID isn’t a negative argument against evolution, and doesn’t try to address religious questions such as the nature or identity of the designer (a point well-established in the writings of design proponents). My other objective was to help reporters understand the scientific evidence for intelligent design—such as the encoded information in DNA, the information processing capabilities of the cell, and the molecular machines common in microbiology.

Barry Lynn had some arguments against intelligent design—incredible ones at that. I'll highlight a few of them.

Lynn started his talk saying that he didn’t have a powerpoint, but he did have a stuffed monkey. During the discussion, Barry’s primary point against intelligent design was that it is "fog soup" or that it just is too “fuzzy” or isn't common sense enough to be legitimate science. I think that’s an odd comment because two evolutionist leaders in the scientific community have implied that the default common sense position is design, and that they have to work hard to convince themselves otherwise in favor of evolution:

“Biology is the study of complicated things that give the appearance of having been designed for a purpose.”
(Richard Dawkins The Blind Watchmaker, pg. 6 (1986))

"Biologists must constantly keep in mind that what they see was not designed, but rather evolved.“
(Francis Crick, What Mad Pursuit: A Personal View of Scientific Discovery, pg. 138 (1990)

Another of Barry’s objections was to raise that common objection, "who designed the designer?" (See here for a great parody of this common objection and this one for a serious refutation [for a quick refutation go here].)

Lynn also stated that perhaps the eye evolved because originally it wasn’t for seeing, but because it made us beautiful—via sexual selection. Posing this hopeful monster hypothesis, he then claimed that design proponents ignore this mode of evolution. I’ll forgive Barry because he isn’t a scientist—but how, pray tell, did organisms without eyes ever see to find organisms with these more attractive eyes? Looks like that argument is not gonna work.

But if we take Barry's objection slightly seriously, it shows how bankrupt co-option arguments are: structures such as the eye (or the flagellar motor, etc.) are far too complex to evolve simply via lucky accidents of pre-adaptation or co-option. Darwin's theory has broken down. Moreover, what of Barry's claim that design proponents don't take into account co-option? Printed in front of Barry on the table was Judge Jones's decision, which he apparently brought with him. Perhaps Barry was duped by Judge Jones's false claim that ID proponents ignore exaptation.

Back to the "eye evolved for sexual selection" argument: Perhaps we just felt one-another’s attractive eyes using our fingers despite the fact we couldn't see them. I don't know--but this wasn’t Barry’s only sex-based argument. In a bizarre comment I honestly couldn't follow, he said something about how we wouldn’t think a porn doll at a porn shop implied supernatural design. I’m not sure if others knew precisely what he was arguing (maybe he just wanted to get a laugh), but I'll try to extract something from it: "Porn dolls" don’t imply supernatural design—they are designed by intelligence—and if anything, this coarse example shows that when we find a designed object, we don’t have to imply a supernatural cause to detect design. And if a doll implies design, what of a living human being? But my main question is, "Why were so many of Barry Lynn's arguments orbiting sex?"

All in all, it was a fun “panel” discussion. I was glad to have the opportunity to convey that ID is not a faith-based argument, and that it is a legitimate, testable scientific theory which has garnished the support of a minority of scientists who are nonetheless participating in scientific conferences, and doing and publishing research.

Barry ridiculed ID as too "fuzzy". I guess that scientist Sir Isaac Newton just was postulating "fog soup" or had no common sense when he claimed "this most beautiful system of the sun, planets, and comets, could only proceed from the council and dominion of an intelligent and powerful Being."

[edited for type-o's and a cooler title --Casey]

Darwinist Calls Oklahoma Academic Freedom Act "Code Language"

Alan Leshner, head of the American Association for the Advancement of Science, is describing the proposed Academic Freedom Act in Oklahoma as "code language ... to promote a narrow religious agenda." Lawrence Selden responds:

So I raise this question: Is "encourag[ing] critical thinking by exposing students to all sides of the scientific debate about evolution" really just "code language" for "promot[ing] a narrow religious agenda"? It seems to me that looking at the alleged "code language" that is being "injected" into Oklahoma law is the best way to decide.

Selden's full response is here.

April 18, 2006

How Many Darwinists Does it Take to Screw in a Light Bulb? Evolutionists and Intelligent Design Scientists Weigh in

A furious debate is stirring over at Cartago Delenda Est. The issue? How many Darwinists does it take to screw in a light bulb?

Charles Darwin: None. But if it could be shown that the bulb entered the socket without a series of clockwise turns, my theory would absolutely break down.

ACLU: None! We have separation of church and state in this country.

Eugenie Scott: None. To say a Darwinist did it is not a scientific explanation.

Panda’s Thumb: None. To say that light bulbs don’t screw themselves in is not a testable proposition. You can’t prove they don’t. That would be an argument from incredulity. You are committing a ‘Darwinist Of The Gaps’ fallacy.

Generic 2: None. The quintessentially non-random process of natural selection is sufficient. Those objects capable of giving off light when screwed into sockets will be in sockets. Those that aren’t will be in the trash.

Richard Dawkins: None. A light bulb that gives off 1% light intensity is very much worth having. A bulb sitting on the shelf at the supermarket gives off a certain amount of light. One in the cupboard at home gives off more. One five feet from the socket gives off more, and one two feet away even more. One in the socket gives off the most of all. It is therefore inevitable that the bulb will reach the socket.

Stephen J. Gould: None. The bulb jumped into the socket when no one was looking. Gradually.

The complete and completely silly debate with opinions from "Kenneth Miller," "The Flying Spaghetti Monster," "Michael Ruse," and several design theorists is here.

April 16, 2006

Do Car Engines Run on Lugnuts? A Response to Ken Miller & Judge Jones's Straw Tests of Irreducible Complexity for the Bacterial Flagellum (Continued--Part II)

(Part II, Version 1.0)

By Casey Luskin
Copyright © 2006 Casey Luskin. All Rights Reserved.

The entire article can be read here

...Yesterday, I posted Part I of this response. To reiterate, there are three primary problems with Judge Jones's ruling that Ken Miller refuted Michael Behe's arguments that the bacterial flagellum is irreducible complex:

(A) Experts say the evidence suggests that the TTSS evolved from the flagellum, and not the other way around.

(B) Behe and other ID-proponents have long-acknowledged “exaptation” or “co-option” as an attempt to evolve biological complexity, and have observed many problems with “co-option” explanations.

(C) Miller has inaccurately characterized how one tests for irreducible complexity, thus refuting only a straw-version of Behe’s concept of irreducible complexity.

Yesterday I posted sections addressing parts (A) and (B). Today I will continue with the response, expanding on Part (C):

(C) Miller’s Incorrect Characterization of Irreducible Complexity

To repeat Miller’s assertion, he testified that irreducible complexity is refuted if one sub-system can perform some other function in the cell:

“Dr. Behe's prediction is that the parts of any irreducibly complex system should have no useful function. Therefore, we ought to be able to take the bacterial flagellum, for example, break its parts down, and discover that none of the parts are good for anything except when we're all assembled in a flagellum.” (Dr. Kenneth Miller Testimony, Day 1, PM Session, page 16.)

The question becomes, “how is Behe’s argument different from that of Ken Miller?” Behe actually formulates irreducible complexity as a test of building an entire system. IC operates on a collection of parts, not each individual part. Even if a separate function could be found for a sub-system, the latter would not refute the irreducible complexity and the unevolvability of the system as a whole. To repeat Behe’s definition, Behe writes:

“In The Origin of Species Darwin stated:
'If it could be demonstrated that any complex organ existed which could not possibly have been formed by numerous, successive, slight modifications, my theory would absolutely break down.'

A system which meets Darwin's criterion is one which exhibits irreducible complexity. By irreducible complexity I mean a single system composed of several well-matched, interacting parts that contribute to the basic function, wherein the removal of any one of the parts causes the system to effectively cease functioning.” (Michael Behe, Darwin's Black Box, pg. 39 (Free Press, 1996).)

Thus, according to Darwin, evolution requires that a system, or its sub-parts, be functional along each small step of their evolution to the final system. Yet one could find a sub-part that could be useful outside of the final system, and yet the total system would still face many points along an "evolutionary pathway" where it could not remain functional along "numerous, successive, slight modifications" that would be necessary for its gradual evolution. (With regards to the flagellum at least 2/3 of the parts are not known to be shared with any other structure therefore might not be even a sub-part of another system at all.) (*** Note: this footnoted statement has been changed in the official version to reflect newly learned information. See below for details.)

Thus, Miller mischaracterizes Behe's argument as one which focuses on the non-functionality of sub-parts, when in fact, Behe’s argument actually focuses on the ability of the entire system to assemble, even if sub-parts can have functions outside of the final system.

A Car Example for Illustration
To understand how Miller's test fails to accurately apply to Behe's formulation of irreducible complexity, consider the example of a car engine and a bolt. Car engines use various kinds of bolts, and a bolt could be seen as a small “sub-part” or “sub-system” of a car engine. Under Miller's logic, if a vital bolt in my car's engine might also to perform some other function—perhaps as a lugnut--then it follows that my car's whole engine system is not irreducibly complex. Such an argument is obviously fallacious.

In assessing whether an engine is irreducibly complex, one must focus on the function of the engine itself, not on the possible function of some sub-part that may operate elsewhere. Of course a bolt out of my engine could serve some other purpose in my car. However this observation does not explain how many complex parts such as pistons, cylinders, the camshaft, valves, the crankshaft, sparkplugs, the distributor cap, and wiring came together in the appropriate configuration to make a functional car engine. Even if all of these parts could perform some other function in the car (which is doubtful), how were these parts assembled properly to construct a functional engine? The answer requires intelligent design.

Behe asserts that a system is irreducibly complex if the system stops functioning upon the removal of one part. This is the appropriate test of Darwin’s theory because it asks the question, “Is there a minimal level of complexity which is required for functionality of this system?” Clearly my car’s engine has a core set of parts necessary in order for it to function. The ability of an engine bolt to also serve as a lugnut does not refute the irreducibly complex arrangement of parts necessary to make the final engine-system functional. Behe never suggests that subsystems cannot play some other role in the cell—in fact he suggests the opposite. Rather, Behe simply argues that evolution requires that the total system must be built up in a slight, step-by-step fashion, where each step is functional.

Miller has mischaracterized irreducible complexity, and his test is a straw-test for refuting irreducible complexity. The test for irreducible complexity does not ask “can one small part of the macrosystem be used to do something else?” as Miller claims, but rather asks “can the system as a whole be built in a step-by-step fashion which does not require any ‘non-slight’ modifications to gain the final target function?” Any non-slight modifications of complexity required to go from functional sub-part(s), operating outside-of-the-final system, to the entire final functional system, represent the irreducible complexity of a system.

Even if Miller could find that every part of the flagellum existed somewhere else in bacteria (which he cannot—he only accounts for the basal body, which constitutes about 1/4 of the total flagellar proteins), Miller is no where close to providing a plausible account of the evolution of the flagellum until he has explained how all the flagellar parts might have come together to produce a functional bacterial flagellum. Only then that Miller claim that the flagellum is not irreducibly complex.

Other Authorities Agree with Behe
William Dembski captures the essence of the problem with Miller's definition and treatment of IC in Dembski’s expert rebuttal in which Dembski writes:

“[F]inding a subsystem of a functional system that performs some other function is hardly an argument for the original system evolving from that other system. One might just as well say that because the motor of a motorcycle can be used as a blender, therefore the [blender] motor evolved into the motorcycle. Perhaps, but not without intelligent design. Indeed, multipart, tightly integrated functional systems almost invariably contain multipart subsystems that serve some different function. At best the TTSS [Type-III Secretory System] represents one possible step in the indirect Darwinian evolution of the bacterial flagellum. But that still wouldn’t constitute a solution to the evolution of the bacterial flagellum. What’s needed is a complete evolutionary path and not merely a possible oasis along the way. To claim otherwise is like saying we can travel by foot from Los Angeles to Tokyo because we’ve discovered the Hawaiian Islands. Evolutionary biology needs to do better than that.” (William A. Dembski, Rebuttal to Reports by Opposing Expert Witnesses, at http://www.designinference.com/documents/2005.09.Expert_Rebuttal_Dembski.pdf.)

Though Miller has accounted for the origin of only a fraction of the flagellar parts, Scott A. Minnich and Stephen C. Meyer also explain how mere availability of parts is insufficient to explain the evolution of a system:

“[E]ven if all the protein parts were somehow available to make a flagellar motor during the evolution of life, the parts would need to be assembled in the correct temporal sequence similar to the way an automobile is assembled in factory. Yet, to choreograph the assembly of the parts of the flagellar motor, present-day bacteria need an elaborate system of genetic instructions as well as many other protein machines to time the expression of those assembly instructions. Arguably, this system is itself irreducibly complex. In any case, the co-option argument tacitly presupposes the need for the very thing it seeks to explain—a functionally interdependent system of proteins.” (Scott A. Minnich and Stephen C. Meyer, Genetic Analysis of coordinate flagellar and type III regulatory circuits in pathogenic bacteria, pg. 8, at http://www.discovery.org/scripts/viewDB/filesDB-download.php?id=389.)

Similarly, philosopher Angus Menuge lays out a number of obstacles which must be overcome by "co-option" or "exaptation" explanations, none of which were addressed by Miller during the trial. Menuge writes:

“For a working flagellum to be built by exaptation, the five following conditions would all have to be met:
“C1: Availability. Among the parts available for recruitment to form the flagellum, there would need to be ones capable of performing the highly specialized tasks of paddle, rotor, and motor, even though all of these items serve some other function or no function.

“C2: Synchronization. The availability of these parts would have to be synchronized so that at some point, either individually or in combination, they are all available at the same time.

“C3: Localization. The selected parts must all be made available at the same ‘construction site,’ perhaps not simultaneously but certainly at the time they are needed.

“C4: Coordination. The parts must be coordinated in just the right way: even if all of the parts of a flagellum are available at the right time, it is clear that the majority of ways of assembling them will be non-functional or irrelevant.

“C5: Interface compatibility. The parts must be mutually compatible, that is, ‘well-matched’ and capable of properly ‘interacting’: even if a paddle, rotor, and motor are put together in the right order, they also need to interface correctly.”

(Angus Menuge, Agents Under Fire: Materialism and the Rationality of Science, pgs. 104-105 (Rowman & Littlefield, 2004).)

William Dembski takes a similar approach to that of Menuge. Dembski effectively combines some of Menuge’s criteria in order to develop a means of calculating the probability of constructing an irreducibly complex object. In calculating the probability of a “discrete combinatorial object” one must take into account the probability of originating the parts, the probability of localizing the parts all in once place, and the probability of configuring the parts together:

Table 1. Comparison of Dembski and Menuge’s required explanatory components for any exaptation-based account of evolution (Table based upon the descriptions in William A. Dembski, No Free Lunch: Why Specified Complexity Cannot be Purchased Without Intelligence, pg. 291 (Rowman & Littlefield, 2002)):

Dembski’s FactorDescriptionAnalogue in Menuge’s Criteria
PorigProbability of originating the building blocks for that objects.C1
PlocalProbability of locating the building blocks in one place once they are given.C2, C3
PconfigProbability of configuring the building blocks once they are given and in one place.C4, C5

It is clear that Miller has found that the probability for originating about 1/4 of the flagellar proteins might be “1/1” if the TTSS (or perhaps a similar structure) existed prior to the flagellum. However he has not accounted for the origin of the remaining the flagellar proteins, nor has he addressed Plocal or Pconfig in his evolutionary scenario. In light of Menuge's and Dembski’s criteria, it seems fair to demand answers from Miller to the following questions:

- What function was performed by the paddle, rotor, or motor outside of the flagellum? (At trial, Miller explained the function for the basal body of the flagellum via the TTSS, but left the most complex and vital motorized portions of the flagellum unexplained.)
- How did the parts become synchronized in the flagellum? (At trial, Miller never discussed this.)
- How did the parts become localized within the flagellum at the same construction site? (At trial, Miller never addressed this issue.)
- How did the parts become structurally coordinated so as to interact when assembled to produce the flagellar swimming function? (Again, Miller also never addressed this issue at trial.)

Thus Miller never answered any of these important questions at the trial. Rather, he presented a straw version of testing irreducible complexity whereby he convinced the Judge in a fashion which did not come remotely close to accounting for how the flagellum might have actually evolved.

A Final Analogy: The Arch
Miller’s treatment of the bacterial flagellum did not refute its irreducibly complexity, as Miller did not address questions about how the final flagellar systems might arise. The existence of other functions for the TTSS does not imply that the flagellar system would not still require large leaps in complexity (or to use Darwin's words, non-slight modifications) in order to ultimately achieve a functional flagellum. To use a final analogy to show the deficiency of Miller’s explanation, consider an attempt to build an irreducibly complex arch (Figure A):


Figure A: An arch is irreducibly complex: if one removes a piece, the remaining pieces will fall down. (Note: For the purpose of illustration, I am temporarily ignoring the common objection that an irreducibly complex arch might be made using natural erosional processes. I am aware of no appropriate "scaffolding" analogy within the biological realm, but it is not the present purpose of this discussion to rebut that objection.)

According to Miller, if we can find a function for some sub-piece, then a system is not irreducibly complex. Now, let’s now break this arch into sub-pieces:


Figure B: Here an arch has been broken up into subpieces. Similarly, Miller has apparently found a flagellar sub-piece (the TTSS) which can perform some other function. The TTSS comprises no more than 1/4 of the total flagellar parts. Similarly, in this arch, there is one large sub-section (labeled “S”) which comprises approximately 1/4 of the total arch. Sub-section “S” can have a function outside of the arch (i.e. here, it can stand on its own). However, this exposes the fallacy of Miller’s test: the ability of sub-section “S” to stand on its own does not therefore dictate that the arch is not irreducibly complex. Thus if one were to removes the top piece (t), the arch crumbles, even if sub-section “S” can still remain standing (Figure C):


Figure C: Even if sub-section “S” can have a function (i.e. stand) on its own outside of the arch, this does not imply that the arch as a whole is not irreducibly complex – capable of being built in a step-by-step manner. Thus, the appropriate test of irreducible complexity asks if the entire system can be built in a step-by-step manner using small, slight-modifications. It is important to note that the system does not become “reducibly complex” simply because one part remains functional outside of the final system.

Correctly Testing Irreducible Complexity:
Miller’s test of irreducible complexity is a straw test. The correct test would have stated:

“Dr. Behe's prediction is that an irreducibly complex system will go through some non-functional stage along any evolutionary pathway. Therefore, we ought to be able to take the bacterial flagellum, for example, remove a part, and discover that the system stops working.”

Miller’s testimony and Judge Jones’s conclusion is based upon a false test of irreducible complexity which focuses on the functionality of one-sub-part, not the functionality of the entire flagellar system.

If Miller could find functions for all flagellar sub-systems outside of the flagellum, he would admittedly be making progress towards an evolutionary explanation by satisfying Angus Menuge's first criterion of "Availability" (C1). However, as Minnich and Meyer ask:

“[T]he other thirty proteins in the flagellar motor (that are not present in the TTSS) are unique to the motor and are not found in any other living system. From whence, then, were these protein parts co-opted?” (Scott A. Minnich and Stephen C. Meyer, Genetic Analysis of coordinate flagellar and type III regulatory circuits in pathogenic bacteria, pg. 8, at http://www.discovery.org/scripts/viewDB/filesDB-download.php?id=389)

Miller has no answer to that question. As it stands, all Miller could provide as evidence for the evolution of the flagellum is the TTSS, and which would account for the availability about 1/4 of Menuge's first step. Ignoring the fact that the TTSS probably evolved from the flagellum, and not the other way around, if Miller could account for the availability (C1) of all of the parts of the flagellum then Miller would simply have to explain the Synchronization (C2), Localization (C3), Coordination (C4), and Interface compatibility (C5) to account for the evolution of the flagellum; thereby eliminating the need for “non-slight” modifications along its evolutionary pathway.

But Miller did none of this. Despite the inadequacy of Miller’s explanations, Judge Jones decided that Dr. Kenneth Miller's arguments and inaccurate characterizations of irreducible complexity were correct. This is ruling was made despite the fact that Dr. Scott Minnich, a pro-ID microbiologist and expert on the flagellum, testified extensively at the trial about how his own tests demonstrate the irreducibly complex nature of the flagellum Consider Minnich’s testimony which Jones completely ignored in the Kitzmiller decision:

"A. I work on the bacterial flagellum, understanding the function of the bacterial flagellum for example by exposing cells to mutagenic compounds or agents, and then scoring for cells that have attenuated or lost motility. This is our phenotype. The cells can swim or they can't. We mutagenize the cells, if we hit a gene that's involved in function of the flagellum, they can't swim, which is a scorable phenotype that we use. Reverse engineering is then employed to identify all these genes. We couple this with biochemistry to essentially rebuild the structure and understand what the function of each individual part is. Summary, it is the process more akin to design that propelled biology from a mere descriptive science to an experimental science in terms of employing these techniques." (Scott Minnich testimony, Day 20, pm session, pg. 105.)

Minnich explained how he mutated all of the flagellar genes and found that the flagellum loses function if even one gene is missing. Thus, the flagellum is irreducibly complex with respect to its gene compliment:

"One mutation, one part knock out, it can't swim. Put that single gene back in we restore motility. Same thing over here. We put, knock out one part, put a good copy of the gene back in, and they can swim. By definition the system is irreducibly complex. We've done that with all 35 components of the flagellum, and we get the same effect." (Scott Minnich Testimony, Day 20, pm session, pg. 107-108.)

Unfortunately Judge Jones chose to ignore this testimony.

Conclusion
Regardless of Judge Jones’ claim, the pro-ID arguments regarding irreducible complexity in the flagellum were never, as Jones said, "refuted." Miller provided the Judge with a false characterization of irreducible complexity and a straw-method of testing it. Unfortunately, this ruling, which canonized Miller's misrepresentation of irreducible complexity, will lead the scientific community and the general public to mistakenly assume that the evolutionary origin of the bacterial flagellum can be explained. Incredibly, despite Minnich's testimony and the presentation of his experimental slides, Judge Jones still held that, "ID … has failed to ... engage in research and testing." (Kitzmiller ruling, pg. 89.)

Had the Judge not also accepted Miller’s fallacious claim that irreducible complexity is not a positive argument for design, but merely a negative argument against evolution, perhaps we might have seen some different findings in this case. Minnich and Meyer make this positive case for the design of the flagellum:

“Molecular machines display a key signature or hallmark of design, namely, irreducible complexity. In all irreducibly complex systems in which the cause of the system is known by experience or observation, intelligent design or engineering played a role the origin of the system. … That we have encountered systems that tax our own capacities as design engineers, justifiably lead us to question whether these systems are the product of undirected, un-purposed, chance and necessity. Indeed, in any other context we would immediately recognize such systems as the product of very intelligent engineering. Although some may argue this is a merely an argument from ignorance, we regard it as an inference to the best explanation, given what we know about the powers of intelligent as opposed to strictly natural or material causes.” (Scott A. Minnich and Stephen C. Meyer, Genetic Analysis of coordinate flagellar and type III regulatory circuits in pathogenic bacteria, pg. 8, at http://www.discovery.org/scripts/viewDB/filesDB-download.php?id=389)

In the final analysis, Judge Jones’s ruling on the origin of the flagellum should be disregarded as an example of partisan politics, not as objective or accurate scientific analysis.

The entire article can be read here

-----
I would like to thank Alex Binz, David Klinghoffer, and an un-named biochemist in the University of California system for their help with this post. Any mistakes are my own.

*** Note added 10/27/06: Version 1.0 of this document (which is the version reprinted here) stated: "With regards to the flagellum at least 2/3 of the parts are not known to be shared with any other structure therefore might not be even a sub-part of another system at all." The latest version of this document, Version 1.5, has changed that statement to reflect newly learned information as follows:

With regards to the flagellum, there is dispute as to whether many flagellar genes can even be said to be homologous to genes outside of the flagellum. This dispute is witnessed in the conclusion of pro-ID biologist Mike Gene who writes when critiquing Nick Matzke’s model attempting to evolve a flagellum: “The various dissimilarities (some very profound) listed above, along with the weakness of the criteria for inferring homology, is only rendered more problematic by the seemingly arbitrary nature of the chosen matches.” Matzke’s model may be found at http://www.talkdesign.org/faqs/flagellum.html Mike Gene’s critique may be found at http://www.idthink.net/biot/flag6/index.html Obviously there are different types of flagella, but Matzke admits that least ¼ of flagellar proteins have no known homology, and also acknowledges that “the flagellar research community has scarcely begun to consider how these systems have evolved.” See Mark J. Pallen and Nicholas J. Matzke, "From The Origin of Species to the origin of bacterial flagella," Nature Reviews Microbiology, AOP, published online 5 September 2006; doi:10.1038/nrmicro1493

Back up to to the main text.

April 15, 2006

Do Car Engines Run on Lugnuts? A Response to Ken Miller & Judge Jones's Straw Tests of Irreducible Complexity for the Bacterial Flagellum (Part I)

(Part I, Version 1.0)

By Casey Luskin
Copyright © 2006 Casey Luskin. All Rights Reserved.

The entire article can be read here

Abstract
In Kitzmiller v. Dover, Judge John E. Jones ruled harshly against the scientific validity of intelligent design. Judge Jones ruled that the irreducible complexity of the bacterial flagellum, as argued by intelligent design proponents during the trial, was refuted by the testimony of the plaintiffs’ expert biology witness, Dr. Kenneth Miller. Dr. Miller misconstrued design theorist Michael Behe’s definition of irreducible complexity by presenting and subsequently refuting only a straw-characterization of the argument. Accordingly, Miller claimed that irreducible complexity is refuted if a separate function can be found for any sub-system of an irreducibly complex system, outside of the entire irreducible complex system, suggesting the sub-system might have been co-opted into the final system through the evolutionary process of exaptation. However, Miller’s characterization ignores the fact that irreducible complexity is defined by testing the ability of the final system to evolve in a step-by-step fashion in which function may not exist at each step. Only by reverse-engineering a system to test for function at each transitional stage can one determine if a system has “reducible complexity” or “irreducible complexity.” The ability to find function for some sub-part, such as the injection function of the Type III Secretory System (which contains approximately ¼ of the genes of bacterial flagellum), does not negate the irreducible complexity of the final system. Moreover, Miller ignored the fact that any evolutionary explanation of a system must account for much more than simply the availability of the parts. In the final analysis, Miller’s testimony did not actually refute irreducible complexity, leaving readers of the Kitzmiller ruling with the unfortunate perception that the evolutionary origin of the bacterial flagellum has been solved.

Introduction: The Definition of Irreducible Complexity
Design theorist and biologist, Michael Behe, defines “irreducible complexity” by looking at a biological system to see if it can be produced in a step-by-step evolutionary fashion. Behe defines irreducible complexity in his book Darwin’s Black Box:

“In The Origin of Species Darwin stated:
'If it could be demonstrated that any complex organ existed which could not possibly have been formed by numerous, successive, slight modifications, my theory would absolutely break down.'

A system which meets Darwin's criterion is one which exhibits irreducible complexity. By irreducible complexity I mean a single system composed of several well-matched, interacting parts that contribute to the basic function, wherein the removal of any one of the parts causes the system to effectively cease functioning.”

(Michael Behe, Darwin's Black Box, pg. 39 (Free Press, 1996) (emphasis added).)

During the Kitzmiller trial, Michael Behe testified in favor of intelligent design by arguing that the bacterial flagellum represents one such biological structure which is irreducibly complex. The bacterial flagellum is a motor-driven propeller for bacterial swimming. (For a technical discussion of the various components of the bacterial flagellum, see David J. DeRosier, Spinning Tails, Current Opinion in Structural Biology, 5:187-193 (1995).) In the Kitzmiller trial, however, Judge Jones’ ruling disagreed with Behe’s claims and alleged that Behe ignored how evolution can effectively produce complex structures like the bacterial flagellum:

“Drs. Miller and Padian testified that Professor Behe’s concept of irreducible complexity depends on ignoring ways in which evolution is known to occur. Although Professor Behe is adamant in his definition of irreducible complexity when he says a precursor “missing a part is by definition nonfunctional,” what he obviously means is that it will not function in the same way the system functions when all the parts are present. For example in the case of the bacterial flagellum, removal of a part may prevent it from acting as a rotary motor. However, Professor Behe excludes, by definition, the possibility that a precursor to the bacterial flagellum functioned not as a rotary motor, but in some other way, for example as a secretory system.” (Kitzmiller ruling, pg. 74. All references to Kitzmiller ruling from Judge Jones original ruling at http://www.pamd.uscourts.gov/kitzmiller/kitzmiller_342.pdf)

What follows is an assessment of the Judge’s findings with respect to the irreducible complexity of the bacterial flagellum.

Ignoring Exaptation?
In the Kitzmiller ruling, Judge Jones uses the term “exaptation” (also called “co-option,” or “preadaptation”) to describe how a part may initially serve a role in the cell, only to be later employed by an irreducibly complex system to perform some different function. The widely used college text Evolutionary Biology describes exaptation as follows:

“Stephen Jay Gould and Elisabeth Vrba (1982) suggest that if an adaptation is a feature evolved by natural selection for its current function, a different term is required for features that, like the hollow bones of birds or the sutures of a young mammal’s skull, did not evolve because of the use to which they are now put. They suggest that such characters that evolved for other functions, or for no function at all, but which have been co-opted for a new use be called exaptations.” (Douglas J. Futuyma, Evolutionary Biology (3rd ed. 1998), pg. 355 (emphasis in original).)

Judge Jones alleges in his ruling that Michael Behe ignores exaptation as a way of accounting for the origin of biological complexity:

"By defining irreducible complexity in the way that he has, Professor Behe attempts to exclude the phenomenon of exaptation by definitional fiat, ignoring as he does so abundant evidence which refutes his argument.” (Kitzmiller ruling, pg. 76.)

Judge Jones’s claim that Behe ignores “exaptation” was based upon the testimony of Dr. Kenneth R. Miller, an evolutionist and the plaintiff's lead-expert biology witness during the trial. Dr. Miller testified that irreducible complexity is refuted if one can find any use for some sub-part of the total system:

“Dr. Behe's prediction is that the parts of any irreducibly complex system should have no useful function. Therefore, we ought to be able to take the bacterial flagellum, for example, break its parts down, and discover that none of the parts are good for anything except when we're all assembled in a flagellum.” (Dr. Kenneth Miller Testimony, Day 1, PM Session, page 16.)

Miller's characterization of irreducible complexity is grossly inaccurate. In particular, Miller applied his argument to real biological situations when he claimed that some sub-systems of the bacterial flagellum can perform a different role in some organisms. For example, Miller observed that the Type III Secretory System (TTSS), which uses approximately 1/4 of the genes involved in the flagellum, can be used by predatory bacteria to inject toxins into Eukaryotic cells. (See Scott A. Minnich and Stephen C. Meyer, Genetic Analysis of coordinate flagellar and type III regulatory circuits in pathogenic
bacteria
, pg. 8, at http://www.discovery.org/scripts/viewDB/filesDB-download.php?id=389.) According to Miller, the presence of the TTSS shows that the bacterial flagellum is not irreducibly complex. However, Miller’s Type III Secretory System argument contains three primary problems:

(A) Experts say the evidence suggests that the TTSS evolved from the flagellum, and not the other way around.

(B) Behe and other ID-proponents have long-acknowledged “exaptation” or “co-option” as an attempt to evolve biological complexity, and have observed many problems with “co-option” explanations.

(C) Miller has inaccurately characterized how one tests for irreducible complexity, thus refuting only a straw-version of Behe’s concept of irreducible complexity.

(A) Which came first: the TTSS or the Flagellum (or neither)?
Firstly, it is worth noting that a leading authority on bacterial systematics, Milton Saier, still believes that TTSS evolved FROM the flagellum, not the other way around, making Miller's claim highly dubious. While Saier acknowledges some may disagree with him, he maintains that the TTSS evolved from the flagellum:

“Regarding the bacterial flagellum and TTSSs, we must consider three (and only three) possibilities. First, the TTSS came first; second, the Fla system came first; or third, both systems evolved from a common precursor. At present, too little information is available to distinguish between these possibilities with certainty. As is often true in evaluating evolutionary arguments, the investigator must rely on logical deduction and intuition. According to my own intuition and the arguments discussed above, I prefer pathway 2. What’s your opinion?” (Milton Saier, "Evolution of bacterial type III protein secretion systems," Trends in Microbiology, Vol 12 (3) pg. 113-15, March, 2004.)

(B) Behe’s Clear Responses to Evolutionary Appeals to Exaptation:
Secondly, refuting both Judge Jones's claim that Behe "attempts to exclude the phenomenon of exaptation by definitional fiat" and also Miller's statement that "Behe's prediction is that the parts of any irreducibly complex system should have no useful function," consider these passages from Darwin’s Black Box in which Behe presents the problems of exaptational arguments when discussing the evolution of the cilium:

"Because the cilium is irreducibly complex, no direct gradual route leads to its production. So an evolutionary story for the cilium must envision a circuitous route, perhaps adapting parts that were originally used for other purposes." (Michael Behe, Darwin’s Black Box, pg. 65-66.)

"For example, suppose you wanted to make a mousetrap. In your garage you might have a piece of wood from an old Popsicle stick (for the platform), a spring from an old wind-up clock, a piece of metal (for the hammer) in the form of a crowbar, a darning needle for the holding bar, and a bottle cap that you fancy to use as a catch. But these pieces couldn't form a functioning mousetrap without extensive modification, and while the modification was going on, they would be unable to work as a mousetrap. Their previous functions make them ill- suited for virtually any new role as part of a complex system. In the case of the cilium, there are analogous problems. The mutated protein that accidentally stuck to microtubules would block their function as "highways" of transport. A protein that indiscriminately bound microtubules together would disrupt the cell's shape--just as a building's shape would be disrupted by an erroneously placed cable that accidentally pulled together girders supporting the building. A linker that strengthened microtubule bundles for structural supports would tend to make them inflexible, unlike the flexible linker nexin. An unregulated motor protein, freshly binding to microtubules, would push apart micrutubules that should be close together. The incipient cilium would not be at the cell surface. If it were not at the cell surface, then internal beating could disrupt the cell; but even if it were at the cell surface, the number of motor proteins would probably not be enough to move the cilium. And even if the cilium moved, an awkward stroke would not necessarily move the cell. And if the cell did move, it would be an unregulated motion using energy and not corresponding to any need of the cell.” (Michael Behe, Darwin’s Black Box, pg. 66-67.)

Previously Behe had also explained evolution does not always necessarily proceed in such a direct route:

“Even if a system is irreducibly complex (and thus cannot have been produced directly), however, one can not definitively rule out the possibility of an indirect, circuitous route. As the complexity of an interacting system increases, though, the likelihood of such an indirect route drops precipitously. And as the number of unexplained, irreducibly complex biological systems increases, our confidence that Darwin’s criterion of failure has been met skyrockets toward the maximum that science allows.” (Michael Behe, Darwin’s Black Box, pg. 40.)

Thus contrary to both the Judge's and Miller’s claims, Behe addresses the possibility that parts can be "co-opted" from other systems and does not shy away from this objection at all. (Indeed, even the basic and introductory pro-ID video entitled “Unlocking the Mystery of Life” deals with the co-option objection.) Behe explains that simply having all of the parts for a system is not enough: one must also have the proper assembly instructions for those parts. Thus, it should be clear that Miller has misrepresented Behe’s argument both by ignoring Behe’s refutation of the co-option theory and by falsely suggesting that Behe holds, “that the parts of any irreducibly complex system should have no useful function [outside of the total irreducibly complex system].”

...to be continued tomorrow. To read the full article, click here. Tomorrow, will be the main section of this article, explaining this issue:

(C) Miller has inaccurately characterized how one tests for irreducible complexity, thus refuting only a straw-version of Behe’s concept of irreducible complexity.

April 14, 2006

Media Overblows Claims of "Human Evolution": Examining the Newest "Missing Link"

Recently I highlighted how the coverage of Tiktaalik revealed the fascinating phenomenon that only after discovering a new "missing link" will evolutionists acknowledge the previously paltry state of fossil evidence for evolution. This behavior is again witnessed in coverage of the discovery of Australopithecus anamensis fossils in Ethiopia. The media has also exaggerated and overblown claims that this evidence supports "human evolution."

The latest "missing link" is actually comprised of a few tooth and bone fragments of Au. anamensis, an ape-like species that lived a little over 4 million years ago. Incredibly, claims of "intermediacy" are based upon 2-3 fragmented canines of "intermediate" size and shape. This has now led to grand claims in the media of finding a "missing link." Because some bone fragments from Ardipithecus ramidus and Australopithecus afarensis were also found in the area, MSNBC highlighted these finds on a front-page article calling this "the most complete chain of human evolution so far." Media coverage of this find thus follows an identical pattern to that of Tiktaalik: incredibly overblown claims of a "transitional fossil" follow stark admissions of how previously bleak the evidence was for evolution. Moreover, claims that this find enlightens "human evolution" are misleading, as these fossils come from ape-like species that long-predate the appearance of our genus Homo, and thought to be far removed from the origin of "humans."

Evolution was "obscure" then and it's obscure now:

As noted, evolutionists only admit how weak the evidence was for evolution after they have some new allegedly "transitional" fossil in their hands. Compare how identical diction was used in Nature to concede the previously "obscure" evidence for tetrapod, and then now australopithecine evolution after recent fossil discoveries were made:

Tiktaalik: "[T]he origin of major tetrapod features has remained obscure for lack of fossils that document the sequence of evolutionary changes" (Daeschler et al., “A Devonian tetrapod-like fish and the evolution of the tetrapod body plan,” Nature, Vol 440:757-763 (April 6, 2006); emphasis added)

Australopithecus: "Until recently, the origins of Australopithecus were obscured by a sparse fossil record." (White et al., "Asa Issie, Aramis and the origin of Australopithecus," Nature, Vol 440:883-889 (April 13, 2006); emphasis added)

Apparently the MSNBC article even felt comfortable enough to admit that we never previously had a continuous sequence of fossils documenting "human evolution" in one place:

"Until now, what scientists had were snapshots of human evolution scattered around the world. Finding everything all in one general area makes those snapshots more of a mini home movie of evolution."

(Fossil discovery fills gap in human evolution, by Seth Borenstein, Associated Press, 4/12/06)

Of course the lack of a "mini home movie" never bothered evolutionists before: critics have always been told not to request continuous fossil sequences exhibiting evolution because species can migrate, and often the evolution takes place in small, isolated populations that don't get preserved as fossils. As Niles Eldredge once said, evolution seems to always be "going on somewhere else." We wouldn't expect to find a continuous sequence of fossil species evolving all in on place; at least, that's what we were told before they found these fossil specimens.

If the origin of Australopithecus was previously "obscured by a sparse fossil record," then one would presume that now we have the answers. Turns out the evidence still remains very "obscure."

What did they really find?
What has really been found has been said to be nothing "new," just an interesting new "location":

"The species anamensis is not new, but its location is what helps explain the shift from one early phase of human-like development to the next, scientists say." (MSNBC article, emphasis added)

According to the National Geographic news article, the find consisted "mainly of jawbone fragments, upper and lower teeth, and a thigh bone"--not an impressive array of bones. The Nature article notes that the teeth they found are nothing new because they "definitively place the Asa Issie sample within expected ranges of Au. anamensis variation." (Nature 440:883-889.) So in other words, they found a few tooth and bone fragments representative of a pre-existing species--nothing truly new!

Missing Link or Missing Teeth?
Incredibly, the entire claim that this species represents a "transitional form" is due to a couple teeth which have intermediate size:

"'This appears to be the link between Australopithecus and Ardipithecus as two different species,' White said. The major noticeable difference between the phases of man can be seen in Australopithecus’ bigger chewing teeth to eat harder food, he said." (MSNBC article)

If this incredible new evidence isn't about to make you a convert, then consider how impressive the media has stated this evidence is:

"The latest fossil unearthed from a human ancestral hot spot in Africa allows scientists to link together the most complete chain of human evolution so far." (MSNBC article)

But here's where the evolutionists make their public relations error: if this is "the most complete chain," then their best "chain" has a lot of missing "links." These bone fragments purportedly tell us how the ape-like genus Australopithecus evolved from the ape-like genus Ardipithecus. Let's look at 3 graphics to asses just how impressive this evidence actually is:

1. Photo of the bone and tooth fragments from which came this "missing link":


(from MSNBC article)

-----

2. Figure 3 from White et al.: Figures 3a and 3b show the glued-together teeth and/or fragments of teeth which form the entire basis for calling this find "intermediate." This is the whole basis for the authors' and the media's claims that this is a "missing link." In 3b there are 2 canines, which form the basis for the "intermediate" claims. In Figures 3d - 3g, the new "intermediate" data is represented in the ASI 2&5 column, which consists of a meager 2 - 3 tooth specimens (seen in the 2 - 3 small square data-points in that column).


(Adapted by permission from Macmillan Publishers Ltd: Nature, T. D. White et. al. "Asa Issie, Aramis and the origin of Australopithecus," 440:886 (2006).)

-------

3. Figure 4 from White at al.: Figure 4a shows precisely what was transitional in this Au. anamensis species: its "Masticatory robusticity" (in other words, its ability to chew harder stuff). Seriously, I am not kidding: this forms the basis for the authors' and the media's claims that this is a "missing link." The evidence for evolution is so abundant [note: sarcasm] that when comparing evolutionary models in Figures 4b and 4c, they explain that "Neither hypothesis can be falsified with available sample densities" because the fossil record is so poor. That's fine: but this should help us to understand the state of the evidence if this is "the most complete chain of human evolution so far."


(Adapted by permission from Macmillan Publishers Ltd: Nature, T. D. White et. al., "Asa Issie, Aramis and the origin of Australopithecus," 440:886 (2006).)

As a Neo-Darwinism skeptic, all I ask is please don't throw me in that briar patch of "intermediate-sized/shaped" (and sometimes glued-together) tooth fragments of previously known hominid species!

Putting the Evidence Into Perspective
Australopithecus was an ape-like genus that is said to have lived from about 1-4 million years ago, and some of its members are said to have evolved into our genus, Homo, around 2 Ma. But this locale doesn't implicate fossils of Homo, nor does it show anything but very early Australopithecus fragments and some Ardipithecus fragments. This find doesn't document anything about the evolution of our actual genus Homo. So why do these media articles misleadingly state this evidence documents "human evolution?"

And what about those "links" farther down the "chain" showing how Australopithecus evolved into Homo? Consider what some authors wrote in a study that wasn't highlighted on the front page of MSNBC:

"The anatomy of the earliest H. sapiens [here meaning Homo erectus & Homo ergaster] sample indicates significant modifications of the ancestral genome and is not simply an extension of evolutionary trends in an earlier australopithecine lineage throughout the Pliocene. In fact, its combination of features never appears earlier..."

(Hawks, J., Hunley, K., Sang-Hee, L., Wolpoff, M., "Population Bottlenecks and Pleistocene Evolution," Journal of Molecular Biology and Evolution, 17(1):2-22 (January, 2000))

MSNBC never highlighted this article on their front page because these authors said the origin of Homo required "a genetic revolution" where "no australopithecine species is obviously transitional." (Sorry, but Au. habilis doesn't cut it.) One commentator even called the state of evidence as showing a "big bang theory" of human evolution (see "New study suggests big bang theory of human evolution"). Perhaps this is because "[t]he first members of early Homo sapiens are really quite distinct from their australopithecine predecessors and contemporaries":


(Left: early member of the genus Homo. Right: one of our alleged australopithecine ancestors. Here the missingness of the link becomes stark. Quote and graphic from "New study suggests big bang theory of human evolution.")

But the evidence presently on MSNBC doesn't even deal with how Homo evolved from Australopithecus. If this is the most complete "chain," then indeed, we're dealing with very fragmentary evidence for "human evolution." More poignantly, this article is wrong to imply this evidence says anything about how ape-like australopithecines evolved into our genus, Homo. Even lead author of the Nature article, Timothy D. White, misleadingly stated in the MSNBC article that this evidence documents "phases of man." That's not true: if anything, these bone fragments provide miniscule suggestions of early phases of very ape-like hominids that predate Homo by 2 m.y. and "man" (Homo sapiens sapiens) by over 3 m.y. This evidence may help plug a miniscule gap in australopithecine evolution (recall, no new species was found, and all they found that was interesting were a couple canines of intermediate size), but contrary to what the MSNBC article says, nothing documents "human evolution" or "phases of man."

The More Things Evolve, The More Things Undergo Stasis
Recent news articles are engaging in emotionalism to blow up these finds of Au. anamensis fossils into something they aren't: a "missing link" that documents "human evolution." It seems that little has changed since 1981 when Constance Holden wrote in Science:

"The field of paleoanthropology naturally excites interest because of our own interest in origins. And, because conclusions of emotional significance to many must be drawn from extremely paltry evidence, it is often difficult to separate the personal from the scientific disputes raging in the field." ("The Politics of Paleoanthropology," Science, p.737 (August 14, 1981).)

If the present evidence for australopithecine evolution before this find was "obscure," perhaps it's safe to say they're still very much in the dark, and that very little has changed in the past 25 years.

April 11, 2006

For Darwinian Evolution, It’s One Step Forward, Acknowledging Two Steps Back: Taking A Look at Tiktaalik

I love it when new "missing links" are discovered, because it's then--and only then--that Darwinists admit how precious little evidence had previously existed for the evolutionary transition in question. When reports came out this week of an alleged example of a fossil representative of the stock that might have led from fish to tetrapods -- Tiktaalik roseae -- evolutionists finally came clean about the previous lack of fossil evidence for such a transition:

“The relationship of limbed vertebrates (tetrapods) to lobe-finned fish (sarcopterygians) is well established, but the origin of major tetrapod features has remained obscure for lack of fossils that document the sequence of evolutionary changes.”

(Edward B. Daeschler, Neil H. Shubin, and Farish A. Jenkins, “A Devonian tetrapod-like fish and the evolution of the tetrapod body plan,” Nature Vol 440: 757-763 (April 6, 2006))

Authority Jennifer Clack even admits that before finding Tiktaalik, the large morphological gap between fish and true tetrapods was "frustratingly wide":

"It has long been clear that limbed vertebrates (tetrapods) evolved from osteolepiform lobefinned fishes3, but until recently the morphological gap between the two groups remained frustratingly wide. The gap was bounded at the top by primitive Devonian tetrapods such as Ichthyostega and Acanthostega from Greenland, and at the bottom by Panderichthys, a tetrapod-like predatory fish from the latest Middle Devonian of Latvia (Fig. 1)."

(Jennifer A. Clack & Per Erik Ahlberg, "A firm step from water to land," Nature 440:747-749 (April 6, 2006); emphasis added)

Again Daeschler et al. reiterate the lack of evidence previous fossils provide for a transition, focusing on deficiencies in what was previously considered to be the closest fish to tetrapods (see the diagram below as well):

"Panderichthys possesses relatively few tetrapod synapomorphies, and provides only partial insight into the origin of major features of the skull, limbs and axial skeleton of early tetrapods. In view of the morphological gap between elpistostegalian fish and tetrapods, the phylogenetic framework for the immediate sister group of tetrapods has been incomplete and our understanding of major anatomical transformations at the fish-tetrapod transition has remained limited."

(Edward B. Daeschler, Neil H. Shubin, and Farish A. Jenkins, “A Devonian tetrapod-like fish and the evolution of the tetrapod body plan,” Nature Vol 440: 757-763 (April 6, 2006))

Walk Off The Stage, Acanthostega
The previous darling of the "fish-to-tetrapod" transition-representatives was Acanthostega gunnari--a true tetrapod. Acanthostega has extremely tetrapod-like limbs, feet (with a few extra fingers), and a pelvic girdle. This little guy was a star of the PBS Evolution's episode II: "Great Transformations," where Jenny Clack called it a "fish with fingers" (The only problem is that Acanthostega wasn't a fish--as Daeschler et al. correctly categorize it as a non-fish tetrapod, contrasting "Skull roofs of elpistostegalian fish and the early tetrapod Acanthostega" [Nature 440:759]. Even Clack, quoted above, calls it a "tetrapod" and distinguishes it from fishes, making one wonder what was going on when PBS Evolution showed her calling it a "fish with fingers"
.)

But only now that we have Tiktaalik will we hear evolutionists boast about the size of the previously large "gap" in this transition, and how Tiktaalik solves all these previously unanswered questions. I'm super skeptical that this new fossil is good evidence that a transition took place: Acanthostega was truly a tetrapod, but Tiktaalik is a fish. As Clack and Ahlberg write, there's still a large gap (and any usefulness a fin had for walking was the result of a lucky pre-adaptation):

"There remains a large morphological gap between them and digits as seen in, for example, Acanthostega: if the digits evolved from these distal bones, the process must have involved considerable developmental repatterning. The implication is that function changed in advance of morphology." (Clack & Ahlberg, Nature 440:748; emphasis added).

I think that Figure 4 from, "The pectoral fin of Tiktaalik roseae and the origin of the tetrapod limb" (by Neil H. Shubin, Edward B. Daeschler, & Farish A. Jenkins Jr, Nature, Vol 440:764-771 (April 6, 2006)) says it all:

(Adapted by permission from Macmillan Publishers Ltd: "The pectoral fin of Tiktaalik roseae and the origin of the tetrapod limb" (by Neil H. Shubin, Edward B. Daeschler, & Farish A. Jenkins Jr, Nature, Vol 440:764-771 (April 6, 2006); figure resized to fit the page except for the text; click for the full figure)

This figure, which Nature graciously has granted permission to reprint, reveals the massive difference in the ray-finned fish-fin of Tiktaalik and the true tetrapod limbs of Acanthostega and Tulerpeton. Is evidence of a transition missing? This new fish fossil doesn’t seem to add much--if anything--to bridge the gap between fish fins and tetrapod limbs. In fact, if anything, the fin of Panderichthys appears closer to a true tetrapod limb than does the fin of Tiktaalik. I would assume that documenting how fins turned into feet would be one of the more important aspects of the fish-to-tetrapod evolutionary story.

In conclusion, this is a fascinating fossil which I'm sure will stir up much debate. But the next time we dig up some fossil of a fin-bound fish (possibly with a few tetrapod-ish characteristics), we'll hear again all about the previously existing big gaps and how Tiktaalik didn't really teach us much after all--but how the new fossil solves all the problems. That's how it usually works, and that makes me wonder where we're really left today. Anyone who thinks that we've found the "missing link" or clear evidence of an evolutionary transition has either forgotten history, or isn't looking very carefully at the evidence.

[figure citation corrected 4/14/06]

AAAS Fears Academic Freedom, Free and Open Inquiry, in Oklahoma

A great opinion article in Friday's Tulsa Today reiterates a point I made in an ENV post last week: Darwinists oppose academic freedom legislation because they want to censor scientific evidence which some scientists think challenges biological evolution.

In the article, Jonathan Bartlett critiques Alan Leshner, CEO of the American Association for the Advancement of Science (AAAS), who opposed the Academic Freedom Bill in Oklahoma:

"First, the bill only covers scientific views and scientific information. Therefore, Intelligent Design can only be included if it is scientific. If Intelligent Design isn't scientific, Leshner has nothing to worry about. If Intelligent Design is scientific, then Leshner is playing politics with science by trying to limit scientific views by law."

Bartlett is absolutely right: Why would the AAAS oppose a bill which permits the presentation of purely scientific information about biological evolution? After all, the bill only protects the teaching of science:

"Every public school teacher in the State of Oklahoma, shall have the affirmative right and freedom to present scientific information pertaining to the full range of scientific views on the biological or chemical origins of life."

(HB 2107)

Why would Leshner oppose this bill? The undeniable answer is that Leshner doesn't want "the full range of scientific views" presented when it comes to biological evolution. He only wants views which support evolution taught, but this bill would open the door to views which challenge evolution--as long as they are scientific. This bill doesn't protect the teaching of religion--it only protects the teaching of science. Why would Leshner oppose such a bill?

By opposing such an innocuous bill, there's no question that for Leshner, this isn't really about a fair presentation of the science, it's about a partisan presentation of the science. Bartlett is absolutely justified to warn readers:

"Science, as a free and open avenue for inquiry, cannot thrive under such political strong-arming tactics."

Support Evolution Research; But Don’t Support Anti-Scientific Attitudes

Last week reports stated that a Canadian evolutionist education expert, Brian Alters, was denied funding of a project entitled “Detrimental effects of popularizing anti-evolution's intelligent design theory on Canadian students, teachers, parents, administrators and policymakers.”

While I am skeptical that design proponents have a desire or capability to stifle evolution-based scholarship, I make my primary point: no one should have his or her funding denied simply because it would support an unpopular position among those holding the funding purse-strings. For this reason, pro-evolution and pro-ID research should both be absolutely supported. Individuals at the SSHRC had no right to deny funding to Dr. Alters’ research if their reason was that they disagreed with his strong pro-evolution viewpoints. But perhaps they had other legitimate reasons for denying his research:

When research would threaten open inquiry in science, should it be funded?

The famous physicist J. Robert Oppenheimer once stated:

"There must be no barriers for freedom of inquiry. There is no place for dogma in science. The scientist … must be free to ask any question, to doubt any assertion, to seek for any evidence, to correct any errors."

(J. Robert Oppenheimer, physicist, Manhattan Project, Life Magazine 10/10/1949)

As it turns out, Brian Alters’ research was based upon the following dogmatic, anti-scientific attitude:

"Evolution is not an assumption, and intelligent design is pseudo-science," said Mr. Alters. "I think SSHRC should come out and state that evolution is a scientific fact and that intelligent design is not."

(http://www.canada.com/ottawacitizen/news/story.html?id=fc342c6a-46b2-440d-ba22-7538fe21d275&k=40427)

Perhaps if Dr. Alters respected Oppenheimer’s quote, he would realize why funding his research would have been dangerous to the spirit of open-inquiry in science. Regardless, it looks like this $40,000 is just a drop in the bucket compared to the $650,000 grant Alters has already received to study the teaching of biological origins in schools.

April 10, 2006

Setting the York Daily Record Straight, Again

We have made it well known that we wish the Dover Area School Board in Pennsylvania had taken our advice. This has been reiterated countless times–before, during and after the litigation and decision. (WE even recently published an entire book about the Dover decision, Traipsing Into Evolution.) Our long-standing policy has been to urge a more robust treatment of evolution in public schools, so that students might learn both the scientific weaknesses and strength’s of neo-Darwinian evolutionary theory and chemical origin-of-life scenarios. But this is NOT the path that was taken in Dover. This too has been communicated all throughout the Kitzmiller saga. But an article from two weeks ago in the York Daily Record shows that some folks. Just. Don’t. Get. It.

YDR reporter Lauri Lebo’s story discusses the return of a former board member to Dover Township to listen, and his attendance at a creationist seminar. Former Dover Area School Board member William Buckingham, who led the Board’s way in adopting its ill-fated policy, was a witness at the Kitzmiller trial. Lebo quoted Buckingham as stating (wrongly) that he had initially been encouraged by Discovery Institute staff to put the theory of intelligent design into Dover schools. In reality, Buckingham was contacted by Discovery Institute out of concern over the events that had already proceeded in Dover and in hopes that the Board would drop the matter.

Just this past week, the YDR printed a letter to the editor by attorney and former Discovery Institute law & policy analyst Seth Cooper:

Apr 6, 2006 —

Lauri Lebo's recent article contains false assertions about my actions by former Dover school board member Bill Buckingham. Lebo's article never consults my posted statement of Dec. 22, 2005, responding to the decision in Kitzmiller v. Dover Area School Board. Therein I reiterated that no one at Discovery Institute ever encouraged anyone in Dover to choose the course they chose. Period.

According to Lebo's article, Buckingham stated I was early on "supportive" of teaching the theory of intelligent design in Dover. This is categorically untrue. In my capacity as a legal and policy analyst for the Discovery Institute, I suggested in the strongest terms that the Dover board not require teaching of the theory of intelligent design. Instead, I reiterated Discovery Institute's long-standing policy position that students be taught both the scientific strengths and weaknesses of neo-Darwinian evolutionary theory (and not be instructed in the alternative theory of intelligent design).

Buckingham's statement that I sent him intelligent design resources is flatly false. I sent materials titled "Icons of Evolution," containing only certain scientific criticisms of aspect's of neo-Darwinian theory and the chemical origin of life. Those materials did not contain arguments for the theory of intelligent design, but were sent in hopes of steering him and Dover clear of the theory of intelligent design.

But Buckingham categorically ignored my most earnest recommendations. He instead followed the advice of Richard Thompson of the Thomas More Law Center. Thompson, it turns out, introduced the intelligent design textbook "Of Pandas and People" to Buckingham and the Dover board. By the time the Dover board hired Thompson's firm, the Dover board knew full well that the leading theorists and proponents of intelligent design did not support their actions. The textbook publisher never supported the Dover board or Thompson, either.

Seth Cooper

Fortunately, Dover is over and design is fine. The Darwin vs. design debate continues to pick up steam, as noted in recent articles in major scientific publications and newspapers. (See recent posts here and here.)

Attempts to Misconstrue Intelligent Design in Kentucky Fail

In the most recent news about the controversy about intelligent design in Kentucky, the Lexington Herald-Ledger’s Political Notebook reports on the nomination of Kentucky’s State Board of Education candidates.

Kentucky Governor Ernie Fletcher took heat for speaking favorably about teaching intelligent design just before Judge Jones’ Kitzmiller decision was issued. The Governor had mentioned intelligent design in his State of the Commonwealth address in January, 2006 and then in February sent a letter about teaching intelligent design to the Kentucky Academy of Sciences. (The letter was in response to the Academy’s December vote to reject any teaching about intelligent design.)

After the Kitzmiller decision struck down the Dover Area School Board’s intelligent design policy, some states, such as Ohio, began retreating from teaching any skepticism of Darwin, out of false fears that critiquing evolution was the equivalent of teaching intelligent design. (See here and here.) The Kentucky Governor, however, has pressed forward, evidently realizing that Kitzmiller does not spell the end to intelligent design. Apparently some of the oft-repeated misconceptions about intelligent design have failed in the Bluegrass State.

The most recent controversy surrounds Fletcher’s nomination of three candidates for the Kentucky State Board of Education. All three expressed a personal view that intelligent design should be included in the curriculum. While Fletcher has been outspoken about intelligent design, a close reading of his letters shows that his policy preference is much more moderate than how it has been portrayed by some of his critics. Fletcher emphasized in his letter to the Kentucky Academy of Sciences that a 1990 state law gives control of the curriculum to local school districts. Fletcher wrote, “I urge school districts to utilize this freedom and empower students with all possible considerations regarding the origin of matter and species.”

Te Governor’s communications director has clarified that the Governor does not necessarily believe that intelligent design must be taught in the science classroom, but that it could be taught in other classes. These important facts make Governor Fletcher’s position appear fairly tempered.

Finally, during the debate over Fletcher’s school board nominees, one House member argued they should "send a message that we are not a state that will fall prey to intelligent design, which is nothing more than creationism.” This argument merely repeats the common misconception that intelligent design and creationism are the same. (This is addressed here and here.) The argument failed, and all three Kentucky State Board of Education nominees passed.

The situation in Kentucky shows that Kitzmiller did not settle the debate about teaching intelligent design. Furthermore, attempts to inflame false fears by equating intelligent design with creationism are not going to work in every state. While Discovery Institute does not want to see ID mandated in schools, it does support those who would give teachers the academic freedom to present scientific information about intelligent design if they chose to do so. See here for more information about Discovery Institute's science education policy recommendations.

April 8, 2006

Science Plays Politics, but Implies Behe and Snoke (2004) Supports Irreducible Complexity and ID after all

Last September, a blogger with The Scientist used the old Darwinist line that Michael Behe and David W. Snoke's 2004 article in Protein Science neither supports irreducible complexity nor ID. The blogger did this to challenge my claim that Michael Behe has authored a peer-reviewed paper in a scientific journal which supports ID. Yet supporting my original claim is an article in the current issue of Science which implies that Behe and Snoke's arguments are precisely about irreducible complexity, and also ID.

In the current issue of Science, Christoph Adami has an article where he concedes that enzyme-substrate interactions can be irreducibly complex (they think they refuted irreducible complexity for one enzyme-substrate system), and that design theorists use this precise irreducible complexity argument to contend for design. Incredibly, Adami packs his own political punches by claiming that anyone who believes that "irreducible complexity" exists anywhere in biology must be "purely political". His grand accusations expose who is really being political in this instance.

While the critics are correct that Behe and Snoke (2004) doesn't contain the phrases "intelligent design" or "irreducible complexity" directly, there is a good reason for this: if the authors had mentioned "intelligent design" in the article, there is little chance it would have been published. Nonetheless, Behe and Snoke's article discusses how protein-protein interactions require multiple amino acid residues to be precisely matched in order for interaction to occur. These enzyme interactions have been often described as a "lock and key" fit. As Behe wrote in a New York Times editorial:

"The intracellular transport system is also quite complex. Plant and animal cells are divided into many discrete compartments; supplies, including enzymes and proteins, have to be shipped between these compartments. Some supplies are packaged into molecular trucks, and each truck has a key that will fit only the lock of its particular cellular destination. Other proteins act as loading docks, opening the truck and letting the contents into the destination compartment."
(Michael Behe, "Darwin Under the Microscope," The New York Times, October 29, 1996, Tuesday Final Section A; Page 25; Column 2; Editorial Desk)
In light of this "staggering complexity," Behe believes that “[t]hese complex systems were designed -- purposely arranged by an intelligent agent." ("Darwin Under the Microscope")

Christoph Adami is not an ID proponent. However, his recent Science article uses the same "lock and key" description for proteins, and claims it can provide at least intuitive evidence for design:

"If an elaborate lock fits an elaborate key, we immediately sense purpose of design: The key was crafted with the idea of the lock in mind. When we come across such lock-and-key pairs in nature, it is natural to ask how these pairs could have evolved by Darwinian evolution. At first glance it appears that the key can only fit the lock if the lock is already present, and the lock cannot evolve except in the presence of the key (because without the key, it does not open). ... This concern has been seized upon by proponents of an 'intelligent design' alternative' to Darwinian evolution that proposes that complex systems--like those that display lock-and-key complexity--cannot evolve. The premise for the argument is that systems of a lock-and-key nature cannot evolve and thus are "irreducibly complex" (3), implying that only the lock-and-key combination, but not its parts, is complex. The argument continues that because such systems do exist in nature, and cannot have evolved, they must have been 'designed.'"

("Reducible Complexity" by Christoph Adami in Science, 311: 61 (April 7, 2006))

Adami is a firm believer that Neo-Darwinian explanations can account for the origin of these "lock and key" fits. However according to Adami, these "lock-and-key" enzyme-substrate interactions can indeed be argued as examples of irreducible complexity, and are even used by design proponents to contend for intelligent design. But Behe and Snoke's paper in Protein Science studies this precise phenomenon: the "lock and key" fit of enzyme-substrate interactions. They might not use the words "irreducible complexity" or "intelligent design" but Adami's own words in science show that those issues can be directly implicated in the Behe and Snoke (2004) study.

Adami’s Own Puffs of Political Smoke
Adami is cognizant that by talking about intelligent design, he might imply there is some kind of bona fide scientific discussion taking place here. (You know, he's talking about the controversy that doesn't exist.) Adami tries to persuade readers to remember that “ID isn’t science—so this exercise in refutation is just a drill” by adding superfluous comments at the end of his article that any claims of irreducible complexity must be “purely political:”

"The Bridgham et al. studies are of particular scientific interest, given the political attention given to intelligent design lately. Although these authors have not directly addressed this controversy in their work--because the work itself is intrinsically interesting to biologists--such studies solidly refute all parts of the intelligent design argument. Those "alternate" ideas, unlike the hypothesis investigated in these papers, remain thoroughly untested. Consequently, whatever debate remains must be characterized as 'purely political.'"

("Reducible Complexity" by Christoph Adami in Science 311: 61 (April 7, 2006), emphasis added)

Many pro-ID scientists have already responded to research by Bridgham et al., showing that they are engaging in smoke and mirrors by claiming that their research refutes ID. Given the weak nature of this evidence and the hyperbolic nature of the claims Adami extrapolates from the paper, perhaps it is Adami who is really playing politics here. After all, look at the bottom line of what this research really found:
Adami highlights that the lock and key fit of the glucocorticoid enzyme with the cortisol substrate is based upon the specificity of merely two amino acids, where the precursor molecule was also functional (lacking those 2 mutations).
In other words, one enzyme might have evolved into another via 2 mutations. This would appear to be a fairly simple system--and, assuming it did evolve in this fashion, an unimpresive example of evolution. Two meager mutations (something which even Behe and Snoke's (2004) simulations found could evolve under mutation and selection) is not an impressive evolutionary leap and there seems no reason to assume that many enzyme-substrate interactions might not require the simultaneous substitution of many more amino acid residues in order to function, vastly decreasing the likelihood of their evolution. (In fact, this research would not address the origin of complex molecular machines requiring many interacting parts, like the bacterial flagellum.) Even if we grant that this present system is "reducibly complex" (with regards to at least 2 meager amino acids, that is), why should we assume that all the other enzyme-substrate interactions in biology follow suit?

It seems quite reasonable to conclude that irreducible complexity might very well still exist in many other systems. By labeling anyone who supports irreducible complexity as “purely political” in light of this interesting but ultimately lightweight research, it is clear that Adami himself is the one playing politics.

Adami simply wants to pretend there is no scientific controversy over irreducible complexity. Perhaps Allen Orr was right when he wrote:

“Many scientists avoid discussing I.D. for strategic reasons. If a scientific claim can be loosely defined as one that scientists take seriously enough to debate, then engaging the intelligent-design movement on scientific grounds, they worry, cedes what it most desires: recognition that its claims are legitimate scientific ones.”
(H. Allen Orr, "Devolution: Why intelligent design isn’t,” The New Yorker, May 30, 2005, emphasis added)
But if Adami feels the need to talk about the science of ID, then perhaps Orr is wrong to pretend that ID poses a non-challenge to evolution that real scientists can simply let slide right off their backs. Of course Adami tries to lightly paper over the discussion with "purely political" comments at the end. If this is "purely political" then why all the talk about irreducible complexity?

We’re Not Buying it, Dr. Adami:

  • If irreducible complexity were simply a "purely political" idea, then Nature wouldn't have published Adami’s Avida paper, which he also proclaims is a refutation of irreducible complexity (see below), which was strangely co-authored by the non-scientist philosopher Robert T. Pennock, who has devoted his entire career to critiquing ID.

  • If irreducible complexity is "purely political," then why did Adami give talks at AAAS meetings entitled Evolution of Biological Complexity, claiming his Avida paper refuted irreducible complexity:
    "It is often claimed that Darwin's theory of evolution is incomplete because it cannot account for the evolution of complex adaptive traits via the accumulation of mutations. At the same time, the concept of biological complexity itself--how it may be defined and whether complexity increases in evolution--is often perceived as controversial. In this talk, Dr. Adami will address both concerns: the definition of complexity and whether there is a trend in its evolution, as well as the mechanisms by which complex traits evolve that appear to be "irreducible". Evidence from experiments that study the evolution of complexity in a digital life form will be shared. These experiments show that complex adaptive traits do emerge via standard Darwinian mechanisms, and that this evolution is accompanied by an increase in a suitably defined measure of complexity." (Abstract of Adami's Evolution of Biological Complexity lecture before the AAAS.)
    (This is especially poignant when Adami's Avida paper doesn't refute irreducible complexity.)

  • If irreducible complexity were simply a “purely political” idea then Adami wouldn't be making such a big deal about the Bridgham et al. paper in Science as a refutation of irreducible complexity.

  • If irreducible complexity were simply a “purely political” idea then Bridgham et al. would not have opened their paper framing itself as a vindication of the same passage from Darwin’s Origin of Species that Michael Behe cites as the basis for his challenges to Darwin from irreducible complexity. (At least this recent article in Science wasn’t coauthored by Barbara Forrest, and if you would find that strange if it had happened, then you should accept that Adami / Pennock et al.'s Avida paper was clearly politically motivated.)

  • If this Bridgham et al. paper doesn’t have some political aspirations, then why did the authors issue a sweeping press release entitled “Evolution of ‘Irreducibly Complex’ Features Explained”?

  • If the Bridgham et al. authors aren't acting politically, why did one co-author recently remove mention of irreducible complexity from his web page, to remove mention of motives to explain the evolutionary origin of "irreducible complex" systems? It looks like Joe Thornton is trying to hide the fact that irreducible complexity is a bona fide scientific idea which he desired to address in his research.

  • If irreducible complexity is simply a "purely poligical" idea, then why are Adami and others making such overbroad claims of refutation of irreducible complexity based on such skimpy evidence?

    By pretending that irreducible complexity is simply a "purely political" idea, it seems fair to ask Adami: Who is the one really playing politics?

  • April 7, 2006

    The Science Stories that Fizzled (and the one that Might Have Been)

    There were three kinds of stories that could have developed from the news that Science magazine released a paper by professors at the University of Oregon's Center for Ecology and Evolutionary Biology that supposedly falsifies Michael Behe's theory of irreducible complexity (as an indication of intelligent design). That Science accompanied the paper with an interpretive piece by Christoph Adami of Claremont, underscores the coup Science hoped it had accomplished. What, studying the paper and commentary, should be done with this news?

    The first possible story was the one that Science hoped: that finally someone in the science world had done actual research to refute Behe's theory. Hence, intelligent design could be dismissed conclusively as bad science.

    Trouble was, in preparing this first story line, the New York Times and the Wall Street Journal science writers contacted us and asked for our scientists' reaction. Mike Behe did answer and conclusively. So did Steve Meyer. There was no way thereafter to say that Thornton et al had made a conclusive case.

    Both the Times and the Journal ran stories, all right, and there was a tone in both stories that this was important research, but both papers also downplayed it. After all, if it had been a Darwinist knockout punch, it might have warranted the big story treatment. But the fact that the study was very well refuted by Discovery scientists meant that both the Science article claim and our refutation would have to be covered in some detail in any big story. And that would reveal to any objective observer that Thornton, et al, had failed.

    The second option, therefore, was the one chosen: run the story, but downplay it. Story one became story two--the minor leagues account.

    However, the third way to cover this story--and the superior way if you think that readers have a right to know what actually is going on in the science world--would have been to tell the truth: the Darwinists, having failed to show (despite Judge John E. Jones' contention, following the ACLU, in the Dover case) that ID is "not science", determined to answer it--as science--after all. This finally concedes that Behe and his colleagues have been doing science all along (see also Behe’s essay in Traipsing Into Evolution). So, we now at last see the hope of moving the ID and evolution debate away from Darwinian name calling and motivation mongering and engage it where it deserves to be debated: in science. So, score one for ID.

    But, in addition, the fact that the Thornton paper so manifestly fails in its aim to falsify irreducible complexity should alert true science-followers that there not only is a debate going on in science, but that the ID people are winning it. Ten years ago, Behe could not get science journals to let him reply to the captious rebuffs of his critics. Now, days after publication of the tenth anniversary edition of Darwin's Black Box--a tremendously popular book for a science subject, with a quarter million copies in print-- with added material by Dr. Behe, Science magazine has attempted to refute Behe's main scientific contention--and failed.

    But does the Oregon Center for Ecology and Evolutionary Biology (with all its public funding) really fail? How would the readers of Science, or the New York Times for that matter, know?

    The only way is if the editors of Science invite Behe to reply on their pages. Since they have not been known to be very open to real scientific debate--only ideological assertions--on this topic in the past, we decided to print on our website the replies to the Science article that Dr. Behe and Dr. Meyer gave to the reporters for the New York Times and the Wall Street Journal. Since, reading their resulting articles, you can see for yourself that Behe's and Meyer's points are hardly acknowledged at all, you also can conclude that those publications are as self-referential and fearful of fair debate as is Science itself. Thank goodness for the blogosphere and the 20,000- 25,000 or so of you who follow this site each day!

    But, let's hope. Science, the Times and the Journal are edited by human beings and human beings can learn and change their minds. (What human beings do not do, of course, is evolve.)

    ------------

    MEMO from Rob Crowther: Behe and Meyer spent a long time on the phone with the Times and Journal writers providing ten major and relevant criticisms of the Oregon paper. They also sent the reporters some follow-up emails, including the one below from Meyer to Kenneth Chang of the Times. Again: see our lengthy response at ID The Future. Also, follow all the relevant links to responses, as well as some additional reading material from this page on the Discovery website. At some point, if it hasn't happened yet, it will dawn on the reader that the reporters ducked the real story.

    -----Original Message----- From: Steve Meyer Sent: Wednesday, April 05, 2006 10:21 AM To: kchang@nytimes.com Cc: Robert Crowther Subject: Our Conversation/Quotes

    Dear Ken,

    I wanted to come back to you the point you raised in the interview. You claimed that because there had been a gene duplication event the loss of binding strength in the cortisol-binding receptor didn¹t matter‹the duplicated gene would maintain that function. But on re-examination of the paper I think this is incorrect. The duplicated gene is being specialized to acquire a different function‹in particular, aldosterone-binding in support of electrolyte homeostasis (cortisol-binding supports other physiological processes such as immunity and inflamation, etc.). Thus, a 100-fold loss of cortisol binding strength in the cortisol-binding receptor is, as I first said, certain to be disruptive of the function of the overall signal transduction circuit in which it operates. In any case, the authors have done no studies on the effect of such a change in an organismal context that would show otherwise.

    I include three quotes below which you may use in your story. I also include a longer explanation of the point I make in the second quote.

    Doug may contact you by e-mail with a reaction/quote of his own.

    Best Wishes,

    Steve Meyer

    The Bridgham et. al. study is trivial. ID theorists have long known that a few mutations can slightly alter an existing protein fold. What we question is whether mutation and selection are sufficient to search the enormous combinatorial space of possibilities necessary to finding fundamentally new protein folds and structures. This study does nothing to allay our skepticism on that score.

    Contrary to what the authors assume receptor-hormone pairs do not constitute irreducibly complex systems. The receptor-hormone pair is only a small component of a signal transduction circuit that regulates other complex physiological processes. For such pairs to have any selective or functional advantage many other protein components have to be present, including the other components of a signal transduction circuit and the physiological processes that such circuits regulate. If this is the best that Behe¹s critics can do after ten years of trying to refute him, then neo-Darwinism is deep trouble.

    The really interesting thing about this paper is not the science it contains‹its scientific results are trivial--but the sociological dynamics surrounding the publication of these papers. The AAAS has repeatedly insisted that is no scientific controversy about intelligent design. Now Science, the AAAS¹s flagship journal, publishes two scientific articles taking positions on a controversy that the AAAS says doesn¹t exist. Will Science now allow Behe to respond or will it only publish articles examining about the controversy claiming that ID is wrong?‹Stephen C. Meyer, Discovery Institute

    Amplification of points in quote #2

    First, the receptor-hormone pairs that Bridgham et. al. study are not irreducibly complex systems. According to Behe, a system is irreducibly complex if it contains many well-matched parts that perform a function such that the removal of any one of those parts would cause the system as a whole to lose function. Given that natural selection favors only functionally advantageous variations, Behe has made clear that ³function² in a biological context necessarily means a selectable functional advantage. Unfortunately, these receptor-ligand pairs do not meet Behe¹s definition of irreducible complexity for a simple reason: receptor-ligand pairs do not by themselves confer any selective advantage. Instead, the receptor-ligand pair is only a small component of the genetic regulation of complex physiological processes such as metabolism, inflammation, immunity, and electrolyte homeostasis. For such pairs to have any selective advantage as part of the regulation of larger physiological processes, many other protein components have to be present. In particular, all the other components of a complete signal transduction circuit have to be present as well as the component parts of the physiological process that such circuits regulate. (Even the ligand itself doesn¹t exist apart from a separate enzyme that produces it and the authors¹ gene duplication scenario does not account for the origin of this necessary component either.) In short, ligand and receptor systems do not by themselves perform selectable functions and thus do not qualify as irreducibly complex systems. Thus, in offering their work as an argument against Behe, the authors have fashioned an elaborate straw-man critique.

    April 6, 2006

    Updated: Latest Fossil Find "No Threat" To Theory of Intelligent Design

    “This latest fossil find poses no threat to intelligent design.” So says Discovery Institute senior fellow and leading intelligent design theorist Dr. William Dembski, adding:

    “Intelligent design does not so much challenge whether evolution occurred but how it occurred. In particular, it questions whether purposeless material processes--as opposed to intelligence--can create biological complexity and diversity.”

    The journal Nature is making news by publishing a report today that a group of researchers claim to have uncovered the skeleton of a 375-million-year-old fish in the Canadian Arctic that they believe is a missing link in the evolution of some fishes to becoming land walking vertebrates. The fish has been named Tiktaalik roseae, meaning "large shallow water fish."

    Even though this find does not challenge intelligent design, there may be good reasons to be skeptical about it.

    These fish are not neccesarily intermediates, explain Discovery Institute scientists I queried about the find. Tiktaalik roseae is one of a set of lobe-finned fishes that include very curious mosaics--these fishes have advanced fully formed characteristics of several different groups. They are not intermediates in the sense that have half-fish/half-tetrapod characteristics. Rather, they have a combination of tetrapod-like features and fish-like features. Paleontologists refer to such organisms as mosaics rather than intermediates.

    The anatomical characters of Tiktaalik and similar taxa were "coded" and analyzed by a computer program. Because of the presence of some advanced characters, the analysis placed Tiktaalik next to a group of tetrapod-like fishes. What is clear is that forms like Tiktaalik are a melange of primitive and more developed features. It is not clear whether they are true transitional forms.

    According to DI Fellows a number of these fishes—Ichthyostega, Elpistostege, Panderichthys—have been hailed in the past as the “missing link.” Maybe one is a missing link; maybe none are. What remains unexplained is how natural selection and random mutation could produce the many novel physiological characteristics that arise in true tetrapods.

    Irreducible Complexity Stands Up To Biologist’s Research Efforts

    After several years of claiming that there is no debate about the theory of intelligent design (ID) researchers have published an article bringing the debate to the pages of the latest issue of Science. Three researchers, Jamie Bridgham, Sean Carroll and Joe Thornton claim to have shown how an irreducibly complex system, such as that described by Discovery senior fellow Michael Behe, might have arisen as the result of gene duplication and a few point mutational changes.

    “This continues the venerable Darwinian tradition of making grandiose claims based on piddling results,” said biochemist Michael Behe, who developed the theory of irreducible complexity in his best-selling book Darwin’s Black Box. “There is nothing in the paper that an ID proponent would think was beyond random mutation and natural selection. In other words, it is a straw man.”

    In a response posted on the Discovery Institute website, ID The Future (www.idthefuture.com) Behe explains: “The authors (including Christoph Adami in his Science commentary) are conveniently defining “irreducible complexity” way, way down. I certainly would not classify their system as anywhere near irreducibly complex (IC). The IC systems I discussed in Darwin’s Black Box contain multiple, active protein factors. Their “system”, on the other hand, consists of just a single protein and its ligand. Although in nature the receptor and ligand are part of a larger system that does have a biological function, the piece of that larger system they pick out does not do anything by itself. In other words, the isolated components they work on are not irreducibly complex."

    In addition to Behe’s response, on Friday Discovery’s Center for Science & Culture will publish an analysis of the research written by molecular biologist Dr. Douglas Axe, philosopher of biology Dr. Paul Nelson, and philosopher of science Dr. Stephen Meyer.

    “In the experiment just two amino acid residues were changed, no new components were added, no old components were taken away,” added Behe. “The fact that such very modest results are ballyhooed owes more, I strongly suspect, to the antipathy that many scientists feel toward ID than to the intrinsic value of the experiment itself.”

    “If this is the best that the Darwinian establishment can do after ten years of trying to refute Behe’s theory of intelligent design, then neo-Darwinian theory is in a world of hurt,” said Dr. Stephen Meyer director of the Center for Science & Culture. “Indeed, Behe’s case grows stronger with each successive attempt to test it by experimental refutation.”

    April 5, 2006

    Personal Persecution Story Inspired Alabama Academic Freedom Bill

    Introduction
    The Alabama Academic Freedom Act was proposed by Senator Wendell Mitchell (Democrat) in the Alabama State Legislature to protect the rights of teachers and students to present scientific views and hold positions regardless of their views on biological evolution. This legislation is needed in light of the threat to teacher academic freedom to present scientific evidence that might challenge evolution, prohibited by Judge Jones in his Kitzmiller ruling. Sadly, it looks like the bill will not pass this year because Alabama State Senator Jim Preuitt (Democrat) pulled an unfair political power-play and demanded that the bill have its application to the K-12 grade levels removed if he were to permit it to receive a vote on the Alabama Senate floor this year.

    This bill has personal significance for one of its main backers, professor Don McDonald. Dr. McDonald was forced to pledge allegiance to evolution while working on his sociology Ph.D., or he might not have been permitted to proceed onward with his dissertation. This just shows that many people who are inspired to protect academic freedom have themselves been victims of Darwinist politics.

    Summary of the Bill
    This year an excellent bill supporting academic freedom for science teachers was proposed by Alabama State Senator Wendell Mitchell (Democrat) in the Alabama State Legislature. Part of the bill explains the need for protecting academic freedom:

    "Existing law does not expressly provide a right nor does it expressly protect tenure and employment for a public school teacher or teacher at an institution of higher education for presenting scientific information pertaining to the full range of scientific views regarding biological evolution. In addition, students are not expressly provided a right to positions on views regarding biological evolution" and thus provided "would expressly provide rights and protection for teachers concerning scientific presentations on views regarding biological evolution and students concerning their positions on views regarding biological evolution."

    This bill is simple and clear: it only protects scientific evidence, and does gives no icense to introduce religion into the classroom. The bill even contains a provision stating "Nothing in this act shall be construed as promoting any religious doctrine." One would think that such a bill would be uncontroverted by Darwinists. What do they have to fear from protecting "scientific presentations on views regarding biological evolution"? Apparently something. It's clear these Darwinists only want certain scientific views in the classroom, but not scientific views which differ from their own.

    In today's climate of censorship and fear, the need for protecting academic freedom is great. Judge Jones ruled in Kitzmiller that Dover school district teachers must censor any scientific evidence that challenges evolution, or they will engage in the unconstitutional and sacrilegious act that would “denigrate or disparage the scientific theory of evolution.” (Kitzmiller, 400 F.Supp.2d at 766.) Elsewhere, teachers may seek to use mainstream scientific resources to inform students that, contrary to what their textbooks state, some embryological data does not support common descent. These teachers should not think that Judge Jones’ edict applies to them, but the current climate of fear could chill their sense of academic freedom. Students who attempt to raise questions about Darwinism, or who try to elicit from the teacher an honest answer about the status of the scientific theory of intelligent design may trigger administrators’ concerns about whether they stand in constitutional jeopardy. A chilling effect on open inquiry is being felt in several states already, including Ohio, South Carolina, and California. Judge Jones’ message is clear: give Darwin only praise, or else face the wrath of the judiciary. (For more on this, see Traipsing Into Evolution.)

    Unfortunately the Alabama Academic Freedom bill looks like it will not move out of the Alabama State Senate because there is insufficient time for a vote this term. Don McDonald, a professor at Troy University who has backed the bill, explains that to get a vote, the bill must be placed on the special order calendar. But this week Alabama Senator Jim Preuitt, chairperson of the Rules Committee, refused to put it on the special order calendar unless the bill was gutted with an amendment to remove any K-12 protection. Senator Preuitt's unfair political-power play was unfortunate, because the Alabama Senate Education Committee had already seen it fit to send the bill to the full Senate for a vote WITHOUT any amendment to remove K-12 protection. (The Senate could still have amended the bill if it wished.) But unfortunately Preuitt demanded the that the bill would not pass his desk unless it was amended to his liking.

    A Personal Connection
    Dr. Don McDonald has a personal connection which inspired his need to protect teacher and student academic freedom regarding biological evolution.

    After five years of coursework, teaching and publication, Dr. McDonald's dissertation process stopped when his committee discovered that McDonald was not a convinced evolutionist. During a presentation meeting, which had nothing to do with Darwinian theory, McDonald was asked if he was familiar with a particular sociological theory that is based on “survival of the fittest” (in this case, among human organizations). The response was “Yes, and I think it more defendable there than in biology.” The dissertation process stopped. Committee members had a discussion among themselves, and one member of the committee was strongly against the dissertation proceeding, meaning the possibility of assigning a PhD to this man would be history. Another member of the committee, seeking to rescue Don’s career, agreed to represent the committee in a private meeting with him, in which he would try to straighten the matter out.

    Faced with this litmus test—bow to Darwin or lose his career—Don decided that if he were to proceed onward with his dissertation, he had no choice but to tell his mentor and that his mentor was right about evolution. Needless to say, this incident did not sit well with Dr. Don McDonald. He hopes that future students will not have to face the same dilemma.

    If teachers and students had the legally-protected academic freedom to hold minority scientific viewpoints on these matters, then perhaps they would not face the ultimatum that forced McDonald to choose between his career, and what he believed to be the best science. How many who pledge support to Darwin today find themselves in the same position? Don McDonald suspects there could be many, giving him pure motivations to see teachers and students protected in Alabama.

    Pressure on Baylor University Building to Right the Wrong Done to Dr. Beckwith

    The Dallas Morning News this past weekend ran an op-ed by first Thing's Joseph Bottum adapted from his original piece about Baylor University's decision to deny tenure to conservative scholar Francis Beckwith. CSC associate director John West blogged about Beckwith and Bottum's articles previously, but it's worth noting that the pressure is being turned up on the University to review this decision and right the wrong.

    April 4, 2006

    Crisis Magazine Reviews American Museum of Natural History

    The April, 2006 edition of Crisis Magazine features a critical review of the Darwin exhibit at the American Museum of Natural History. George S. Johnson’s article, “An Evening with Darwin in New York,” is a thoughtful analysis of the museum content mixed with general criticism of the Darwinian orthodoxy.

    The article walks through the museum in broad brush strokes while taking note of the stories about Darwinian evolution not told by the exhibit. The review starts with the exhibits treatment of fossils, and features extended notes from Niles Eldredge, and many paleontologists who find the fossil record somewhat lacking as evidence for Darwin. Not surprisingly, the criticisms of these paleontologists, all mainstream secular scientists, were left out of the display.

    The exhibit then moves to genetics, where Johnson finds the evidence of “evolution in action” unconvincing: “It’s all very interesting, but it tells us nothing about the origin of species.” The article notes that many secular scientists have found the extrapolation necessary for Darwinism to work to be problematic. Johnson laments that, “The semantic shuffle from 'variation' to 'evolution' nonetheless fools a lot of people.” The article discusses why DNA and modern genetics cannot solve the problem of the evolution of complexity. Johnson also offers plenty of criticism of natural selection, again referencing many skeptical mainstream scientists.

    Johnson concludes, “What the show really demonstrates is that Darwinism has turned into a public orthodoxy that must be defended at all costs.” The article is worth reading, particularly for the well-researched quotes from influential scientists who are skeptical of the evolutionary explanation.

    Did the ACLU Squeeze the Intelligent Design Decision out of Dover?

    The taxpayers in Dover Pennsylvania may have been fleeced by the ACLU and Americans United for Separation of Church and State (AUSCS) for a shocking $1 million dollar bill.

    Joe Manzari and Seth Cooper’s article today in The American Enterprise Institute Online brings this dirty little secret into the public light.

    A few months ago when the ACLU announced that they “generously” would only demand $1 million in attorneys fees for the Kitzmiller case, the casual observer probably thought nothing of it.

    However, once the facts are examined, as Manzari and Cooper nicely lay out, the attorneys fees collected by the ACLU are not merely the cost of losing a lawsuit, but rather look much more like a fat taxpayer funded gift to the ACLU & AUSCS.

    Manzari & Cooper explain in detail how the newly elected Dover Area School Board, which campaigned on removing the ID policy actually chose to keep the policy during their first meeting. Why? Because the Board members understood that removing the policy could have ended the legal controversy. Without the school board deciding to keep the policy, the same policy that board publicly opposed, the ACLU & AUSCS may not have been able to claim attorneys fees.

    (Cooper and Manzari's incredible findings stand regardless of whether the authors may have missed the point that one board member, Bryan Rehm, had not yet had his election certified when the vote took place. If the best response the Darwinists can muster is to nitpick one paragraph about Bryan Rehm while failing to refute the entire piece's discussion of evidence of alleged collusion, then perhaps the Darwinists are missing the forest for the trees, just so they can attempt to dismiss this embarrassing scandal!)

    In essence, the new Dover school board was fully aware that keeping the policy in place increased the risk of expensive attorneys fees. Manzari & Cooper explain why it now appears that there was collusion between the ACLU, AUSCS, and Dover school board members. If what Manzari and Cooper say is true, this alleged collusion allowed the school board to effectively guarantee the Kitzmiller decision at a purchase price of $1 million dollars. This appropriation of public funds should be cause for outrage. Check out the Manzari & Cooper article for more shocking details.

    April 3, 2006

    Eric Pianka: Disease "will control the scourge of humanity"

    The Texas Academy of Science honored University of Texas biologist Eric Pianka as its 2006 Distinguished Texas Scientist last month, despite the fact (or perhaps because of the fact) that Pianka, an ecologist, argues that what this planet really needs is a nasty virus to wipe out 90% of the population.

    "[Disease] will control the scourge of humanity," Pianka said, according to the Seguin Gazette. "We're looking forward to a huge collapse."

    Another award winning scientist, Forrest Mims, Chairman of the Environmental Science Section of the Texas Academy of Science, told the Gazette that "he's seen countless doomsday predictions come and go. But Pianka's is different, Mims said. Pianka, he insists, exhibits genuine cause for alarm":

    "He recommended airborne Ebola as an ideal killing virus," Mims said. "He showed slides of the Four Horsemen of the apocalypse and human skulls. He joked about requiring universal sterilization. It reminded me of a futuristic science fiction movie with a crazed scientist planning the death of humanity."

    It's no coincidence that those who accept a materialistic/anti-design view of life's origin (like Pianka) also typically buy into a zero-sum-game view of human activity and economic growth. These philosophical materialists have left out of their equation the role of creativity.

    Our biosphere wasn't the product of a creative intelligence but rather of atoms knocking about in the void, they insist. Having defined a Creative Intelligence out of the equation of human origins, they then seek out political, economic, and ecological models that minimize or ignore the role of human creativity--ideologies that view life as a zero-sum game and humans as mere animals or, worse, as an aggressive pestilence on the Earth.

    Decade after decade has seen predictions about how mass starvation, plague, and apocalyptic, global ecological disaster, caused by population and consumption growth, are just around the corner. That these predictions have again and again proven false (as we've passed one population milestone after another) hasn't deterred the doomsayers in the least. They keep returning to their zero-sum charts, showing the population curving upward, consumption rising even faster, and then extrapolating from that to ruin and disaster.

    All of this leaves out of the equation creativity, the ability of intelligent agents to innovate, to create new and better ways to make and do things.

    Have we made mistakes? Of course. Is there more we can do to clean up rivers and streams and oceans and cities around the world? Of course. But we won't preserve the Earth by telling ourselves that we're nothing more than a vicious pestilence, by pretending that we do not have dominion over the Earth. (Imagine such an approach transferred to the sphere of parenting.) We would do better to recognize the unique causal power of creative intelligence--both in origins science where it is routinely and perversely denied in the face of growing evidence, and in our models of human activity--even as we remind ourselves of the responsibility we have as stewards of planet Earth.


    The Citizen Scientist has an extensive report on Pianka's speech and award ceremony here.

    Doctor Doom, Eric Pianka, Receives Standing Ovation from Texas Academy of Science

    The following is excerpted from "Meeting Doctor Doom" by Forrest Mims, Chairman of the Environmental Science Section of the Texas Academy of Science:

    ... I watched in amazement as a few hundred members of the Texas Academy of Science rose to their feet and gave a standing ovation to a speech that enthusiastically advocated the elimination of 90 percent of Earth's population by airborne Ebola. The speech was given by Dr. Eric R. Pianka (Fig. 1), the University of Texas evolutionary ecologist and lizard expert who the Academy named the 2006 Distinguished Texas Scientist.

    Something curious occurred a minute before Pianka began speaking. An official of the Academy approached a video camera operator at the front of the auditorium and engaged him in animated conversation. The camera operator did not look pleased as he pointed the lens of the big camera to the ceiling and slowly walked away.

    This curious incident came to mind a few minutes later when Professor Pianka began his speech by explaining that the general public is not yet ready to hear what he was about to tell us.

    Because of many years of experience as a writer and editor, Pianka's strange introduction and the TV camera incident raised a red flag in my mind. Suddenly I forgot that I was a member of the Texas Academy of Science and chairman of its Environmental Science Section. Instead, I grabbed a notepad so I could take on the role of science reporter.

    One of Pianka's earliest points was a condemnation of anthropocentrism, or the idea that humankind occupies a privileged position in the Universe. He told a story about how a neighbor asked him what good the lizards are that he studies. He answered, “What good are you?”

    Pianka hammered his point home by exclaiming, “We're no better than bacteria!”

    Pianka then began laying out his concerns about how human overpopulation is ruining the Earth. He presented a doomsday scenario in which he claimed that the sharp increase in human population since the beginning of the industrial age is devastating the planet. He warned that quick steps must be taken to restore the planet before it's too late.

    Saving the Earth with Ebola

    Professor Pianka said the Earth as we know it will not survive without drastic measures. Then, and without presenting any data to justify this number, he asserted that the only feasible solution to saving the Earth is to reduce the population to 10 percent of the present number.

    He then showed solutions for reducing the world's population in the form of a slide depicting the Four Horsemen of the Apocalypse. War and famine would not do, he explained. Instead, disease offered the most efficient and fastest way to kill the billions that must soon die if the population crisis is to be solved.

    Pianka then displayed a slide showing rows of human skulls, one of which had red lights flashing from its eye sockets.

    AIDS is not an efficient killer, he explained, because it is too slow. His favorite candidate for eliminating 90 percent of the world's population is airborne Ebola ( Ebola Reston ), because it is both highly lethal and it kills in days, instead of years. However, Professor Pianka did not mention that Ebola victims die a slow and torturous death as the virus initiates a cascade of biological calamities inside the victim that eventually liquefy the internal organs.

    After praising the Ebola virus for its efficiency at killing, Pianka paused, leaned over the lectern, looked at us and carefully said, “We've got airborne 90 percent mortality in humans. Killing humans. Think about that.”

    With his slide of human skulls towering on the screen behind him, Professor Pianka was deadly serious. The audience that had been applauding some of his statements now sat silent.

    After a dramatic pause, Pianka returned to politics and environmentalism. But he revisited his call for mass death when he reflected on the oil situation.

    “And the fossil fuels are running out,” he said, “so I think we may have to cut back to two billion, which would be about one-third as many people.” So the oil crisis alone may require eliminating two-third's of the world's population.

    How soon must the mass dying begin if Earth is to be saved? Apparently fairly soon, for Pianka suggested he might be around when the killer disease goes to work. He was born in 1939, and his lengthy obituary appears on his web site.

    When Pianka finished his remarks, the audience applauded. It wasn't merely a smattering of polite clapping that audiences diplomatically reserve for poor or boring speakers. It was a loud, vigorous and enthusiastic applause.

    Questions for Dr. Doom

    Then came the question and answer session, in which Professor Pianka stated that other diseases are also efficient killers.

    The audience laughed when he said, “You know, the bird flu's good, too.” They laughed again when he proposed, with a discernable note of glee in his voice that, “We need to sterilize everybody on the Earth.”

    After noting that the audience did not represent the general population, a questioner asked, "What kind of reception have you received as you have presented these ideas to other audiences that are not representative of us?"

    Pianka replied, "I speak to the converted!"

    Pianka responded to more questions by condemning politicians in general and Al Gore by name, because they do not address the population problem and "...because they deceive the public in every way they can to stay in power."

    He spoke glowingly of the police state in China that enforces their one-child policy. He said, "Smarter people have fewer kids." ...

    With this, the questioning was over. Immediately almost every scientist, professor and college student present stood to their feet and vigorously applauded the man who had enthusiastically endorsed the elimination of 90 percent of the human population. Some even cheered. Dozens then mobbed the professor at the lectern to extend greetings and ask questions. It was necessary to wait a while before I could get close enough to take some photographs (Fig. 1).

    I was assigned to judge a paper in a grad student competition after the speech. On the way, three professors dismissed Pianka as a crank. While waiting to enter the competition room, a group of a dozen Lamar University students expressed outrage over the Pianka speech.

    Yet five hours later, the distinguished leaders of the Texas Academy of Science presented Pianka with a plaque in recognition of his being named 2006 Distinguished Texas Scientist. When the banquet hall filled with more than 400 people responded with enthusiastic applause, I walked out in protest.

    Corresponding with Dr. Doom

    Recently I exchanged a number of e-mails with Pianka. I pointed out to him that one might infer his death wish was really aimed at Africans, for Ebola is found only in Central Africa. He replied that Ebola does not discriminate, kills everyone and could spread to Europe and the the Americas by a single infected airplane passenger.

    In his last e-mail, Pianka wrote that I completely fail to understand his arguments. So I did a check and found verification of my interpretation of his remarks on his own web site. In a student evaluation of a 2004 course he taught, one of Professor Pianka's students wrote, "Though I agree that convervation [sic] biology is of utmost importance to the world, I do not think that preaching that 90% of the human population should die of ebola [sic] is the most effective means of encouraging conservation awareness." (Go here and scroll down to just before the Fall 2005 evaluation section near the end.)

    Yet the majority of his student reviews were favorable, with one even saying, “ I worship Dr. Pianka.”

    The 45-minute lecture before the Texas Academy of Science converted a university biology senior into a Pianka disciple, who then published a blog that seriously supports Pianka's mass death wish.

    Dangerous Times
    Let me now remove my reporter's hat for a moment and tell you what I think. We live in dangerous times. The national security of many countries is at risk. Science has become tainted by highly publicized cases of misconduct and fraud.

    Must now we worry that a Pianka-worshipping former student might someday become a professional biologist or physician with access to the most deadly strains of viruses and bacteria? I believe that airborne Ebola is unlikely to threaten the world outside of Central Africa. But scientists have regenerated the 1918 Spanish flu virus that killed 50 million people. There is concern that small pox might someday return. And what other terrible plagues are waiting out there in the natural world to cross the species barrier and to which scientists will one day have access?

    Meanwhile, I still can't get out of my mind the pleasant spring day in Texas when a few hundred scientists of the Texas Academy of Science gave a standing ovation for a speaker who they heard advocate for the slow and torturous death of over five billion human beings. ...


    [The Citizen Scientist has more here.]

    Dotted Divider Line

    AFP_WebAd-anim.gif
    Stand up for Science
    Support Academic Freedom
    Sign the Petition








    Send an email to us at:
    cscinfo@discovery.org


    Powered by
    Movable Type 3.33